View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2843_low_3 (Length: 384)

Name: NF2843_low_3
Description: NF2843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2843_low_3
NF2843_low_3
[»] chr3 (12 HSPs)
chr3 (39-374)||(32996678-32997015)
chr3 (140-208)||(5354405-5354473)
chr3 (39-90)||(17227946-17227997)
chr3 (38-73)||(38742189-38742224)
chr3 (40-86)||(41755499-41755545)
chr3 (39-88)||(21812600-21812649)
chr3 (39-88)||(45242987-45243036)
chr3 (39-72)||(46721974-46722007)
chr3 (40-88)||(36750437-36750485)
chr3 (40-88)||(37105077-37105125)
chr3 (40-88)||(44686255-44686302)
chr3 (40-88)||(49757182-49757230)
[»] chr2 (7 HSPs)
chr2 (146-371)||(24741513-24741738)
chr2 (40-121)||(24741772-24741853)
chr2 (40-88)||(4479702-4479750)
chr2 (40-88)||(14573261-14573309)
chr2 (40-88)||(14573999-14574047)
chr2 (40-88)||(21471017-21471065)
chr2 (40-88)||(21471954-21472002)
[»] chr8 (8 HSPs)
chr8 (140-223)||(25876629-25876712)
chr8 (40-223)||(7424421-7424610)
chr8 (40-124)||(25876521-25876605)
chr8 (38-90)||(1365827-1365879)
chr8 (40-88)||(34992264-34992312)
chr8 (40-90)||(61454-61504)
chr8 (39-88)||(27918047-27918096)
chr8 (40-88)||(41859310-41859358)
[»] chr4 (14 HSPs)
chr4 (141-223)||(42544596-42544678)
chr4 (40-124)||(42544488-42544572)
chr4 (38-88)||(21165445-21165495)
chr4 (38-88)||(38694954-38695004)
chr4 (39-88)||(25371545-25371594)
chr4 (40-73)||(52757813-52757846)
chr4 (40-88)||(37275088-37275136)
chr4 (45-88)||(3847891-3847934)
chr4 (41-88)||(36864818-36864865)
chr4 (40-90)||(47198605-47198655)
chr4 (40-90)||(55160065-55160114)
chr4 (40-88)||(11417687-11417735)
chr4 (40-88)||(26611283-26611331)
chr4 (40-88)||(29651332-29651380)
[»] chr6 (12 HSPs)
chr6 (272-371)||(24549639-24549742)
chr6 (38-88)||(15083318-15083368)
chr6 (40-88)||(3543063-3543111)
chr6 (39-119)||(33078283-33078363)
chr6 (42-88)||(3542816-3542862)
chr6 (39-121)||(24551566-24551648)
chr6 (140-193)||(24551489-24551541)
chr6 (39-88)||(33480628-33480677)
chr6 (40-88)||(7159341-7159389)
chr6 (40-88)||(7193338-7193386)
chr6 (40-88)||(7532440-7532488)
chr6 (36-88)||(22579931-22579983)
[»] chr1 (8 HSPs)
chr1 (39-88)||(49610705-49610754)
chr1 (40-88)||(193850-193898)
chr1 (39-88)||(43737728-43737777)
chr1 (40-88)||(1012547-1012595)
chr1 (40-88)||(16270207-16270255)
chr1 (40-88)||(23440865-23440913)
chr1 (40-88)||(51974437-51974485)
chr1 (40-88)||(51987827-51987875)
[»] scaffold0041 (1 HSPs)
scaffold0041 (38-88)||(27575-27625)
[»] chr5 (6 HSPs)
chr5 (46-88)||(4607470-4607512)
chr5 (40-88)||(8204120-8204168)
chr5 (40-88)||(12190158-12190206)
chr5 (40-88)||(15184017-15184065)
chr5 (145-208)||(31147477-31147538)
chr5 (39-87)||(39950403-39950451)
[»] scaffold0311 (1 HSPs)
scaffold0311 (40-88)||(160-208)
[»] chr7 (8 HSPs)
chr7 (40-88)||(668179-668227)
chr7 (40-88)||(17145622-17145670)
chr7 (40-88)||(37468910-37468958)
chr7 (40-88)||(37469005-37469053)
chr7 (40-88)||(37864307-37864355)
chr7 (40-88)||(38778854-38778902)
chr7 (40-88)||(38779563-38779611)
chr7 (40-88)||(41194513-41194561)


Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 39 - 374
Target Start/End: Complemental strand, 32997015 - 32996678
Alignment:
Q  39 tggtgccatttaatttgggaaagaagacttttttctc-accatgagaaagtctctttaccaaggacacctgtcgattttgaacttgcnnnnnnnnnnnnn 137  Q
    ||||||||||||||||| |||||||||||||||| || |||||| ||||||||||||||||||||||| ||||| ||||||||||||                 
T  32997015 tggtgccatttaatttgagaaagaagacttttttttccaccatgggaaagtctctttaccaaggacacgtgtcggttttgaacttgcaaaaaaaaaaaaa 32996916  T
Q  138 nn-ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaaaacatgaaattat 236  Q
       |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32996915 aaactcagtttattattttaatgttatttccaagcttactactgcacctccccatttctccattacaccacaaaactgattgattaaaacatgaaattat 32996816  T
Q  237 attattcttcttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaattgttcttcttctagcgtaaaata 336  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  32996815 attcttcttcttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaactgttcttcttctcgcgtaaaata 32996716  T
Q  337 ctcagtttccaacaaagaaaatcaactcttcttctctg 374  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  32996715 ctcagtttccaacaaagaacatcaactcttcttctctg 32996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 208
Target Start/End: Complemental strand, 5354473 - 5354405
Alignment:
Q  140 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccaca 208  Q
    |||||||||||||||||||||||| |  |||||||||  |||||||||| |||| | || |||||||||    
T  5354473 ctcaatttattattttaatgttgtgtttaagcttactgttgcacctccctatttcttcagtacaccaca 5354405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 90
Target Start/End: Complemental strand, 17227997 - 17227946
Alignment:
Q  39 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 90  Q
    ||||| ||||||||||||||||| |||||| |||| |||||||| |||||||    
T  17227997 tggtggcatttaatttgggaaaggagacttctttcccaccatgaaaaagtct 17227946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 38742224 - 38742189
Alignment:
Q  38 ttggtgccatttaatttgggaaagaagacttttttc 73  Q
    ||||||||||||||| ||||||||||||||||||||    
T  38742224 ttggtgccatttaatctgggaaagaagacttttttc 38742189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 41755499 - 41755545
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaa 86  Q
    |||| ||||||||||||||||| ||| ||||||| ||||||||||||    
T  41755499 ggtgtcatttaatttgggaaaggagagttttttcccaccatgagaaa 41755545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 21812649 - 21812600
Alignment:
Q  39 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    ||||||| ||||||||||||||| |||||||||| ||| ||||| |||||    
T  21812649 tggtgccgtttaatttgggaaaggagacttttttttcatcatgaaaaagt 21812600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 45243036 - 45242987
Alignment:
Q  39 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    ||||||||||||||||||||||||||| || |||  ||||||| ||||||    
T  45243036 tggtgccatttaatttgggaaagaagagttcttttccaccatgggaaagt 45242987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 46722007 - 46721974
Alignment:
Q  39 tggtgccatttaatttgggaaagaagactttttt 72  Q
    ||||| ||||||||||||||||||||||||||||    
T  46722007 tggtgtcatttaatttgggaaagaagactttttt 46721974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 36750485 - 36750437
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  36750485 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 36750437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 37105125 - 37105077
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||| ||||||||||||||  ||||||||||| ||||||| ||||||    
T  37105125 ggtgccgtttaatttgggaaacgagacttttttcccaccatgggaaagt 37105077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 44686255 - 44686302
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    ||||||||||||||||| |||| ||| |||||| |||||||||||||||    
T  44686255 ggtgccatttaatttggaaaaggagagtttttt-tcaccatgagaaagt 44686302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 49757230 - 49757182
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||| ||||||||||||||| |||||||||||  |||||| ||||||    
T  49757230 ggtgccgtttaatttgggaaaggagacttttttcctaccatgggaaagt 49757182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 178; Significance: 6e-96; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 146 - 371
Target Start/End: Complemental strand, 24741738 - 24741513
Alignment:
Q  146 ttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaaaacatgaaattatattattctt 245  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||    
T  24741738 ttattattttaatgttgtttccaagcttactactgcacctccccatttcttcagtacaccacaaaactgattgattaaaacatgaaattatattcttctt 24741639  T
Q  246 cttctcacgtgcatcaaatatgaaaaaactcacaacataagaatacccagaaaaagcttaacatcaattgttcttcttctagcgtaaaatactcagtttc 345  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||| ||||| |||||||||||||    
T  24741638 cttctcacgtacatcaaatatgaaaaaactcacaacataagaatacccaaaaaaggcttaacatcaattgtacttcttctcgcgtacaatactcagtttc 24741539  T
Q  346 caacaaagaaaatcaactcttcttct 371  Q
    |||||||||| ||||||| |||||||    
T  24741538 caacaaagaacatcaactattcttct 24741513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 24741853 - 24741772
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaact 121  Q
    |||||| ||||||||||||||||||||||||||| |||||||  |||  ||||||||||||||||||||||  |||||||||    
T  24741853 ggtgccgtttaatttgggaaagaagacttttttcccaccatggaaaaacctctttaccaaggacacctgtcagttttgaact 24741772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 4479750 - 4479702
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||||||||||| ||||||    
T  4479750 ggtgccatttaatttgggaaaggagagttctttctcaccatgggaaagt 4479702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 14573261 - 14573309
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  14573261 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 14573309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 14574047 - 14573999
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| |||||| |||||||    
T  14574047 ggtgccatttaatttgggaaaggagagttctttcccaccataagaaagt 14573999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 21471017 - 21471065
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  21471017 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 21471065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 21472002 - 21471954
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  21472002 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 21471954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 5e-35; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 25876629 - 25876712
Alignment:
Q  140 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  25876629 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttccccattacaccacaaaactgattgattaa 25876712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 223
Target Start/End: Complemental strand, 7424610 - 7424421
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgcnnnnnnnnnnnnnnn 139  Q
    ||||| |||||||||| ||||||||||||||||  ||||||| ||||||||||||||||||||||| ||||| |||| |||||||                   
T  7424610 ggtgcaatttaatttgagaaagaagactttttttccaccatgggaaagtctctttaccaaggacacttgtcggtttttaacttgcaaaaaaaaaaaacaa 7424511  T
Q  140 ------ctcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 223  Q
          |||||||||||||||||||||| ||||||| |||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  7424510 aaaaaactcaatttattattttaatgttctttccaaacttactactgcacctccccatttccgcattacaccacaaaactgattgattaa 7424421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 25876521 - 25876605
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgc 124  Q
    |||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||| ||||| || ||||| |||| |||||||    
T  25876521 ggtgccatttaatttgggaaagaagatttttttcccaccatgggaaagtctctttacgaaggatacttgtcggtttttaacttgc 25876605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 1365827 - 1365879
Alignment:
Q  38 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 90  Q
    |||||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  1365827 ttggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtct 1365879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 34992312 - 34992264
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  34992312 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 34992264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 61454 - 61504
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 90  Q
    |||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  61454 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagtct 61504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 27918096 - 27918047
Alignment:
Q  39 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    ||||||| ||||||||||||||  ||||||||||| ||||||| ||||||    
T  27918096 tggtgccgtttaatttgggaaatgagacttttttcccaccatgggaaagt 27918047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 41859310 - 41859358
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  41859310 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 41859358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 42544596 - 42544678
Alignment:
Q  141 tcaatttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccacaaaactgattgattaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||    
T  42544596 tcaatttattattttaatgttgtttccaagcttactactgcacctccccatttccccattacaccataaaactgattgattaa 42544678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 40 - 124
Target Start/End: Original strand, 42544488 - 42544572
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaacttgc 124  Q
    |||||||||||||||||||||||||||||||||| |||||||  |||||||||||| ||||||||| ||||| |||| |||||||    
T  42544488 ggtgccatttaatttgggaaagaagacttttttcccaccatggaaaagtctctttatcaaggacacttgtcggtttttaacttgc 42544572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 88
Target Start/End: Original strand, 21165445 - 21165495
Alignment:
Q  38 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||||||| | || |||| ||||||||||||||    
T  21165445 ttggtgccatttaatttgggaaagaatagttctttcccaccatgagaaagt 21165495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 38695004 - 38694954
Alignment:
Q  38 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  38695004 ttggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 38694954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 25371594 - 25371545
Alignment:
Q  39 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    ||||| ||||||||||||||||| |||||| |||| ||||||||||||||    
T  25371594 tggtgacatttaatttgggaaaggagacttctttcccaccatgagaaagt 25371545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 52757813 - 52757846
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttc 73  Q
    ||||||||||||||||||||||||||||||||||    
T  52757813 ggtgccatttaatttgggaaagaagacttttttc 52757846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 37275088 - 37275136
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||| ||||||||||||||| |||||| |||| ||||||||||||||    
T  37275088 ggtgccgtttaatttgggaaaggagacttctttcccaccatgagaaagt 37275136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 45 - 88
Target Start/End: Original strand, 3847891 - 3847934
Alignment:
Q  45 catttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||||    
T  3847891 catttaatttgggaaaggagacttttttcccaccatgggaaagt 3847934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 36864818 - 36864865
Alignment:
Q  41 gtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||| |||||||||||||||| ||| || |||||||||||||||||||    
T  36864818 gtgctatttaatttgggaaaggagagttctttctcaccatgagaaagt 36864865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 47198605 - 47198655
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 90  Q
    |||| ||||||||||||||||| |||||| |||| ||||||| ||||||||    
T  47198605 ggtgacatttaatttgggaaaggagacttctttcccaccatgggaaagtct 47198655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 55160114 - 55160065
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtct 90  Q
    |||| ||||||||||||||||| |||| |||||||||||||| ||||||||    
T  55160114 ggtggcatttaatttgggaaaggagac-tttttctcaccatgggaaagtct 55160065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 11417687 - 11417735
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  11417687 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 11417735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 26611331 - 26611283
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||| ||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  26611331 ggtgtcatttaatttgggaaaggagagttttttcccaccatgggaaagt 26611283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 29651380 - 29651332
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  29651380 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 29651332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 272 - 371
Target Start/End: Complemental strand, 24549742 - 24549639
Alignment:
Q  272 aactcacaacataagaatacccagaaaaa----gcttaacatcaattgttcttcttctagcgtaaaatactcagtttccaacaaagaaaatcaactcttc 367  Q
    ||||||||||||||||| |||||||||||    |||||||||||| | |||||||||| |||||   ||||||||||| ||||||||| |||||||||||    
T  24549742 aactcacaacataagaaaacccagaaaaaaaaagcttaacatcaactattcttcttctcgcgtaccctactcagtttcgaacaaagaacatcaactcttc 24549643  T
Q  368 ttct 371  Q
    ||||    
T  24549642 ttct 24549639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 15083368 - 15083318
Alignment:
Q  38 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  15083368 ttggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 15083318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 3543111 - 3543063
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  3543111 ggtgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3543063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 33078363 - 33078283
Alignment:
Q  39 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaa 119  Q
    ||||||| |||||||||| |||  |||||||||| | |||||| || |||| ||||||| ||||||||||||  |||||||    
T  33078363 tggtgccgtttaatttggaaaatgagactttttttttaccatgggacagtccctttacccaggacacctgtcagttttgaa 33078283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 3542816 - 3542862
Alignment:
Q  42 tgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||| ||| ||||||| ||||||| ||||||    
T  3542816 tgccatttaatttgggaaaggagagttttttcccaccatgggaaagt 3542862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 24551648 - 24551566
Alignment:
Q  39 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagtctctttaccaaggacacctgtcgattttgaact 121  Q
    ||||||| ||||||||| |||   ||||||||||  ||| |||| |||||  ||||||| |||||| ||||||||||||||||    
T  24551648 tggtgccgtttaatttgagaattgagactttttttccactatgaaaaagtacctttacccaggacatctgtcgattttgaact 24551566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 24551541 - 24551489
Alignment:
Q  140 ctcaatttattattttaatgttgtttccaagcttactactgcacctccccattt 193  Q
    |||||||||||||||||||||| ||| ||||||||||| |||| |||| |||||    
T  24551541 ctcaatttattattttaatgtt-ttttcaagcttactattgcatctcctcattt 24551489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 33480677 - 33480628
Alignment:
Q  39 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    ||||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  33480677 tggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 33480628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 7159389 - 7159341
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| | ||||||||| || |||| ||||||    
T  7159389 ggtgccatttaatttgggaaagcaaacttttttcccatcatgggaaagt 7159341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 7193338 - 7193386
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  7193338 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 7193386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 7532488 - 7532440
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||| ||||||||||||||||| |||||| ||| |||||||| ||||||    
T  7532488 ggtggcatttaatttgggaaaggagacttctttttcaccatgggaaagt 7532440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 88
Target Start/End: Original strand, 22579931 - 22579983
Alignment:
Q  36 tcttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||||||| ||| || |||  ||||||| ||||||    
T  22579931 tcttggtgccatttaatttgggaaaggagagttcttttccaccatgggaaagt 22579983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 49610705 - 49610754
Alignment:
Q  39 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    ||||||||||| ||||||||||||||||||||||| | ||||| ||||||    
T  49610705 tggtgccattttatttgggaaagaagacttttttccctccatgggaaagt 49610754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 193850 - 193898
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||||||||||    
T  193850 ggtgccatttaatttgggaaaggagagttctttcccaccatgagaaagt 193898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 43737728 - 43737777
Alignment:
Q  39 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    ||||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  43737728 tggtgccatttaatttgggaaagtagagttatttcccaccatgggaaagt 43737777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 1012547 - 1012595
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||| ||||||||||||||| ||| ||||||| ||||||| ||||||    
T  1012547 ggtgccgtttaatttgggaaaggagatttttttcccaccatgggaaagt 1012595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 16270207 - 16270255
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  16270207 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 16270255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 23440913 - 23440865
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  23440913 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 23440865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 51974437 - 51974485
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  51974437 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 51974485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 51987827 - 51987875
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||| ||||||||||||||||| |||||| |||| ||||||| ||||||    
T  51987827 ggtggcatttaatttgggaaaggagacttctttcccaccatgggaaagt 51987875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 88
Target Start/End: Complemental strand, 27625 - 27575
Alignment:
Q  38 ttggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    ||||||||||||||||||| |||| ||| ||||||| ||||||| ||||||    
T  27625 ttggtgccatttaatttggaaaaggagagttttttcccaccatgggaaagt 27575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 88
Target Start/End: Original strand, 4607470 - 4607512
Alignment:
Q  46 atttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||| ||||||||||| ||||||| ||||||    
T  4607470 atttaatttgggaaagtagacttttttcccaccatgggaaagt 4607512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 8204120 - 8204168
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  8204120 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 8204168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 12190206 - 12190158
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||  ||| ||||||| ||||||| ||||||    
T  12190206 ggtgccatttaatttgggaaaagagagttttttcccaccatgggaaagt 12190158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 15184065 - 15184017
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  15184065 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 15184017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 31147477 - 31147538
Alignment:
Q  145 tttattattttaatgttgtttccaagcttactactgcacctccccatttttccattacaccaca 208  Q
    |||||||||||||||||||||  ||||||||| ||||||  |||||||| | ||||||| ||||    
T  31147477 tttattattttaatgttgttttgaagcttactgctgcac--ccccatttcttcattacaacaca 31147538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Original strand, 39950403 - 39950451
Alignment:
Q  39 tggtgccatttaatttgggaaagaagacttttttctcaccatgagaaag 87  Q
    ||||||||||||||||||||||| ||| || |||| ||||||| |||||    
T  39950403 tggtgccatttaatttgggaaaggagagttctttcccaccatgggaaag 39950451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 208 - 160
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  208 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 668179 - 668227
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  668179 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 668227  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 17145622 - 17145670
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  17145622 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 17145670  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 37468910 - 37468958
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  37468910 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 37468958  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 37469053 - 37469005
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  37469053 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 37469005  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 37864355 - 37864307
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    ||||||||||||||||||||| |||| || |||| ||||||| ||||||    
T  37864355 ggtgccatttaatttgggaaataagagttctttcccaccatgggaaagt 37864307  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 38778854 - 38778902
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  38778854 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 38778902  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 38779611 - 38779563
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  38779611 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 38779563  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 41194513 - 41194561
Alignment:
Q  40 ggtgccatttaatttgggaaagaagacttttttctcaccatgagaaagt 88  Q
    |||||||||||||||||||||| ||| || |||| ||||||| ||||||    
T  41194513 ggtgccatttaatttgggaaaggagagttctttcccaccatgggaaagt 41194561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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