View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2843_low_4 (Length: 259)

Name: NF2843_low_4
Description: NF2843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2843_low_4
NF2843_low_4
[»] chr1 (3 HSPs)
chr1 (8-241)||(52750929-52751167)
chr1 (38-218)||(24508937-24509123)
chr1 (79-121)||(44008175-44008217)
[»] chr2 (1 HSPs)
chr2 (8-241)||(3093874-3094105)
[»] chr3 (2 HSPs)
chr3 (8-218)||(33389959-33390174)
chr3 (38-216)||(52255000-52255184)
[»] chr4 (4 HSPs)
chr4 (38-241)||(13630474-13630683)
chr4 (38-216)||(44183291-44183475)
chr4 (38-216)||(50282405-50282589)
chr4 (38-166)||(9091824-9091962)
[»] chr6 (1 HSPs)
chr6 (38-241)||(902212-902421)
[»] chr7 (1 HSPs)
chr7 (39-216)||(17236790-17236973)


Alignment Details
Target: chr1 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 52751167 - 52750929
Alignment:
Q  8 caccaccaccaccagacataacaacaattttctaaagatatcaatgaactaatatcctcaccttatactagtcatccaattgtaaaatttcagttttcaa 107  Q
    |||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| ||| ||||| || ||||||    
T  52751167 caccacaacaactagacataacaacaattttctaaagatatcaatgaattaatatcctcaccttatactactcatccaatcgtataatttaagctttcaa 52751068  T
Q  108 ctgttcaatcttaa-----atagatcttcgcaaataacctttcttctttctccttctactacttgacccattactgcaatttcttagatttggctggggt 202  Q
    ||||||||||||||     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52751067 ctgttcaatcttaagatccatagatctccgcaaataacctttcttctttctccttctactacttgacccattactgcaatttcttagatttggctggggt 52750968  T
Q  203 cgaataaagaggaatttatagaggaagagaggccgagtg 241  Q
    ||| |||||||||||| ||||||| ||||||| ||||||    
T  52750967 cgagtaaagaggaattgatagagggagagaggtcgagtg 52750929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 38 - 218
Target Start/End: Complemental strand, 24509123 - 24508937
Alignment:
Q  38 tctaaagatatcaatgaactaatatcctcaccttata-ctagtcatccaattgtaaaatttcagttttcaactgttcaatcttaa-----atagatcttc 131  Q
    ||||||||||||||| |||||||| | |||||||||| ||| |||||||||||||||||||||  ||||| ||||||||||||||     |||||||| |    
T  24509123 tctaaagatatcaataaactaataccttcaccttataactactcatccaattgtaaaatttcaactttcatctgttcaatcttaagatccatagatctcc 24509024  T
Q  132 gcaaataacctttcttctttctccttctactacttgacccattactgcaatttcttagatttggctggggtcgaataaagaggaatt 218  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||    
T  24509023 gcaaataacctttcttctttctccttcaactacttgacccattactgcaatttcttagatttggcttgggttgagtaaagaggaatt 24508937  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 121
Target Start/End: Complemental strand, 44008217 - 44008175
Alignment:
Q  79 tcatccaattgtaaaatttcagttttcaactgttcaatcttaa 121  Q
    |||||||||||||||||||||| |||||| |||||||||||||    
T  44008217 tcatccaattgtaaaatttcagctttcaattgttcaatcttaa 44008175  T

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Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 3094105 - 3093874
Alignment:
Q  8 caccaccaccaccagacataacaacaattttctaaagatatcaatgaactaatatcctcaccttatactagtcatccaattgtaaaatttcagttttcaa 107  Q
    |||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  3094105 caccacaacaactagacataacaacaattttctaaagatatcaatgaactaatatcctcaccttatactagtcatccaattgtaaaatttaagctttcaa 3094006  T
Q  108 ctgttcaatcttaa-----atagatcttcgcaaataacctttcttctttctccttctactacttgacccattactgcaatttcttagatttggctggggt 202  Q
    || |||||||||||     | |||||| | ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  3094005 ctcttcaatcttaagatccacagatctccacaaataac-------ctttctccttctactacttgacccattactgcaatttcttagatttggttggggt 3093913  T
Q  203 cgaataaagaggaatttatagaggaagagaggccgagtg 241  Q
    |||||||||||||||||||||||| ||||||| ||||||    
T  3093912 cgaataaagaggaatttatagagggagagaggtcgagtg 3093874  T

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Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 8 - 218
Target Start/End: Complemental strand, 33390174 - 33389959
Alignment:
Q  8 caccaccaccaccagacataacaacaattttctaaagatatcaatgaactaatatcctcaccttatactagtcatccaattgtaaaatttcagttttcaa 107  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||  |||| |||||||||||| ||||||    
T  33390174 caccacaacaactagacataacaacaattttctaaagatatcaatgaactaatatcctcaccttataatactcactcaatcgtaaaatttcagctttcaa 33390075  T
Q  108 ctgttcaatcttaa-----atagatcttcgcaaataacctttcttctttctccttctactacttgacccattactgcaatttcttagatttggctggggt 202  Q
    ||||||||||||||     |||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  33390074 ctgttcaatcttaagatccatagatctccgcaaataacctttcttctctctgcttctactacttgacccattactgcaatttcttagatttggctggggt 33389975  T
Q  203 cgaataaagaggaatt 218  Q
    ||| ||||||||||||    
T  33389974 cgagtaaagaggaatt 33389959  T

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Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 52255184 - 52255000
Alignment:
Q  38 tctaaagatatcaatgaactaatatcctcaccttata-ctagtcatccaattgtaaaatttcagttttcaactgttcaatcttaa-----atagatcttc 131  Q
    ||||||||||||||| |||||||| | |||||||||| ||| || ||||||||||||||||||  ||||||||||||||||||||     |||||||| |    
T  52255184 tctaaagatatcaataaactaataccttcaccttataactactcttccaattgtaaaatttcaactttcaactgttcaatcttaagatccatagatctcc 52255085  T
Q  132 gcaaataacctttcttctttctccttctactacttgacccattactgcaatttcttagatttggctggggtcgaataaagaggaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||    
T  52255084 gcaaataacctttcttctttctccttctactacttgacccattaatgcaatttcttagatttggcttgggttgagtaaagaggaa 52255000  T

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Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 38 - 241
Target Start/End: Original strand, 13630474 - 13630683
Alignment:
Q  38 tctaaagatatcaatgaactaatatcctcaccttata-ctagtcatccaattgtaaaatttcagttttcaactgttcaatcttaa-----atagatcttc 131  Q
    |||||||||||||||||||||||| | |||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||     || |||||      
T  13630474 tctaaagatatcaatgaactaataccttcaccttataactactcatccaatcgtaaaatttcagctttcaactgttcaatcttaagatccatggatctct 13630573  T
Q  132 gcaaataacctttcttctttctccttctactacttgacccattactgcaatttcttagatttggctggggtcgaataaagaggaatttatagaggaagag 231  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||| |||||||||||| ||||||| ||||    
T  13630574 gcaaataacctttcttctttctccttctactacttgacccattactgcaatttcctagatttggctaggatcgagtaaagaggaattgatagagggagag 13630673  T
Q  232 aggccgagtg 241  Q
    ||| ||||||    
T  13630674 aggtcgagtg 13630683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 44183475 - 44183291
Alignment:
Q  38 tctaaagatatcaatgaactaatatcctcaccttata-ctagtcatccaattgtaaaatttcagttttcaactgttcaatcttaa-----atagatcttc 131  Q
    ||||||||||||||| |||||||| | |||||||||| ||| |||||||||||||||||||||  ||||||||||||||||||||     |||||||| |    
T  44183475 tctaaagatatcaataaactaataccttcaccttataactactcatccaattgtaaaatttcaactttcaactgttcaatcttaagatccatagatctcc 44183376  T
Q  132 gcaaataacctttcttctttctccttctactacttgacccattactgcaatttcttagatttggctggggtcgaataaagaggaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||    
T  44183375 gcaaataacctttcttctttctccttctactacttgacccattaatgcaatttcttagatttggcttgggttgagtaaagaggaa 44183291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 38 - 216
Target Start/End: Complemental strand, 50282589 - 50282405
Alignment:
Q  38 tctaaagatatcaatgaactaatatcctcaccttata-ctagtcatccaattgtaaaatttcagttttcaactgttcaatcttaa-----atagatcttc 131  Q
    |||||| |||||||| |||||||| | |||||||||| ||| ||||| |||||||||||||||  |||||| |||||||||||||     |||||||| |    
T  50282589 tctaaaaatatcaataaactaataccttcaccttataactactcatcaaattgtaaaatttcaactttcaaatgttcaatcttaagatccatagatctcc 50282490  T
Q  132 gcaaataacctttcttctttctccttctactacttgacccattactgcaatttcttagatttggctggggtcgaataaagaggaa 216  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||    
T  50282489 gcaaataacctttcttctttctccttctactacttgacccattaatgcaatttcttagatttggcttgggttgagtaaagaggaa 50282405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 38 - 166
Target Start/End: Original strand, 9091824 - 9091962
Alignment:
Q  38 tctaaagatatcaatgaactaatatcctcaccttata-ctagtcatccaattgtaaaatttcagttttcaactgttcaatcttaa---------atagat 127  Q
    ||||||||||||||| ||||||||   |||||||||| ||| |||||||||||||||||||||  |||||| |||||||||||||         ||||||    
T  9091824 tctaaagatatcaataaactaatactttcaccttataactactcatccaattgtaaaatttcaactttcaattgttcaatcttaaaatccatacatagat 9091923  T
Q  128 cttcgcaaataacctttcttctttctccttctactactt 166  Q
    || |||||||||| ||||||||||||||||| |||||||    
T  9091924 ctccgcaaataacatttcttctttctccttcaactactt 9091962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 38 - 241
Target Start/End: Complemental strand, 902421 - 902212
Alignment:
Q  38 tctaaagatatcaatgaactaatatcctcaccttata-ctagtcatccaattgtaaaatttcagttttcaactgttcaatcttaa-----atagatcttc 131  Q
    |||||||||||||||||| ||||| | |||||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||     ||||||||      
T  902421 tctaaagatatcaatgaattaataccttcaccttataactactcatccaatcgtaaaatttcagctttcaactgttcaatcttaagattcatagatctat 902322  T
Q  132 gcaaataacctttcttctttctccttctactacttgacccattactgcaatttcttagatttggctggggtcgaataaagaggaatttatagaggaagag 231  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||    
T  902321 gcaaataacctttcttctttctccttctactacttgaccaattaccgcaatttcttagatttggctgggatcgagtaaagaggaattgatagagggagag 902222  T
Q  232 aggccgagtg 241  Q
     || ||||||    
T  902221 tggtcgagtg 902212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 39 - 216
Target Start/End: Complemental strand, 17236973 - 17236790
Alignment:
Q  39 ctaaagatatcaatgaactaatatcctcaccttata-ctagtcatccaattgtaaaatttcagttttcaactgttcaatcttaa-----atagatcttcg 132  Q
    |||||||||||||| |||||||| | | |||||||| | | |||||||||||||||||||||  |||||| |||||||||||||     |||||||| ||    
T  17236973 ctaaagatatcaataaactaatacctttaccttataacaactcatccaattgtaaaatttcaactttcaattgttcaatcttaagatccatagatctccg 17236874  T
Q  133 caaataacctttcttctttctccttctactacttgacccattactgcaatttcttagatttggctggggtcgaataaagaggaa 216  Q
    |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||| || ||||||||||    
T  17236873 caaataacctttcttctttctcattctactacttgacccattaatgcaatttcttagatttggcttgggttgagtaaagaggaa 17236790  T

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