View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2844_high_1 (Length: 696)
Name: NF2844_high_1
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2844_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 589; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 13 - 680
Target Start/End: Complemental strand, 10368293 - 10367626
Alignment:
| Q |
13 |
aaaataaaactatcttatcattgcttactgatcatgtgcattgatttcaatgctattgggtcgggtgcaagtgaatcgaattcgaaactgtatcgaaatc |
112 |
Q |
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| T |
10368293 |
aaaataaaactatcttatcattgcttactgatcatgtgcattgatttcaatgctattgggtcgggtgcaagtgaatcgaattcgaaactgtatcgaaatc |
10368194 |
T |
|
| Q |
113 |
caacggctttcagtccatgtatgatccacaagatgaagctcaaataattttctaaccatagaatgttgtccattccaaaagcaactggaaatcacgaaaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10368193 |
caacggctttcagtccatgtatgatccacaagatgaagctcaaataattttctaaccatagaatgttgtccattccaaaagcaactggaaatcacgaaaa |
10368094 |
T |
|
| Q |
213 |
gtcgtccatttcaagatacgagatgagggtggtatggattagcatatacatgagatgggaatggttgagatgtttgaattacaatccaaaaacctctttc |
312 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10368093 |
gtcgtccattacaagatacgagatgagggtggtatggattagcatatacatgagatgggaatggttgagatgtttgaattacaatccaaaaacctctttc |
10367994 |
T |
|
| Q |
313 |
tatgtcatatgctgcaagcttttcattccttgaacaaacaaaaaacttgctcttacaaacagttccagaactaactcccccaaaatctaaaggcagactt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10367993 |
tatgtcatatgctgcaagcttttcattccttgaacaaacataaaacttggtcttacaaacagttccagaactaactcccccaaaatctaaaggaagactt |
10367894 |
T |
|
| Q |
413 |
tgtatatcagtccattcgtttgttgaagaatcataaatttctccacgatacaatgactcgttctcggttctttctatagcaatcaataaaaatgttcttt |
512 |
Q |
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| T |
10367893 |
tgtatatcagtccattcatttgttgaagaatcataaatttctccacgatacaatgactcgttcacggttcttcctatagcaatcaataaaaatgatcttt |
10367794 |
T |
|
| Q |
513 |
taaagaccgttgagcttgtcgttgaatgatcactttttctttgtccaatgaacttgtatgtcatagccattttactaatgaaagatgaatacttgtaagg |
612 |
Q |
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|||||||| |||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
10367793 |
taaagacctttgagcttgtagatgaacgatcactttttctttgtccaatgaacttgcatgtcatagccattttactaatgaaa-atgaatacttgcaagg |
10367695 |
T |
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| Q |
613 |
aataatagaatcctcaatgactcctaataaaggaagagctctagaat-tttcatagatggcatattatg |
680 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
10367694 |
aataatagaatcctcaatgactactaataaaggaagagctctcgaatatttcatagatggcatattatg |
10367626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 286 - 333
Target Start/End: Original strand, 54155219 - 54155266
Alignment:
| Q |
286 |
ttgaattacaatccaaaaacctctttctatgtcatatgctgcaagctt |
333 |
Q |
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| T |
54155219 |
ttgaattgcaatccagaaacctcgttctatgtcatatgctgcaagctt |
54155266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 43658375 - 43658309
Alignment:
| Q |
271 |
gaatggttgagatgtttgaattacaatccaaaaacctctttctatgtcatatgctgcaagcttttca |
337 |
Q |
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||||||| || ||||||| ||| ||||||||||| || ||||||||||||| ||| ||||||||||| |
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| T |
43658375 |
gaatggtagatatgtttgtattgcaatccaaaaatctttttctatgtcatacgctacaagcttttca |
43658309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 594 - 680
Target Start/End: Complemental strand, 43658080 - 43657993
Alignment:
| Q |
594 |
aagatgaatacttgtaaggaataatagaatcctcaatgactcctaataaaggaagagctctagaat-tttcatagatggcatattatg |
680 |
Q |
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|||||||| ||||||||||||||| | ||||||| |||||||||| | |||||| ||||| || || |||||||||||||||||| |
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| T |
43658080 |
aagatgaacacttgtaaggaataacatgatcctcagtgactcctaacacgggaagatatctagcatattccatagatggcatattatg |
43657993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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