View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2844_high_12 (Length: 395)

Name: NF2844_high_12
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2844_high_12
NF2844_high_12
[»] chr6 (42 HSPs)
chr6 (31-389)||(25074784-25075142)
chr6 (1-386)||(26950630-26951015)
chr6 (1-389)||(26960011-26960400)
chr6 (1-389)||(26636533-26636921)
chr6 (1-389)||(26742499-26742887)
chr6 (31-389)||(26849629-26849987)
chr6 (1-293)||(26975838-26976130)
chr6 (31-389)||(26812445-26812803)
chr6 (36-389)||(27664121-27664465)
chr6 (95-387)||(26938010-26938302)
chr6 (1-210)||(31289155-31289365)
chr6 (282-386)||(28140703-28140807)
chr6 (260-363)||(28097376-28097479)
chr6 (346-389)||(28186626-28186669)
chr6 (346-389)||(28296647-28296690)
chr6 (346-389)||(28326710-28326753)
chr6 (346-389)||(28504346-28504389)
chr6 (346-389)||(28515383-28515426)
chr6 (260-386)||(27591931-27592057)
chr6 (260-386)||(27676530-27676656)
chr6 (82-200)||(28235533-28235651)
chr6 (82-204)||(28326446-28326568)
chr6 (82-204)||(28504082-28504204)
chr6 (260-386)||(31285705-31285831)
chr6 (341-386)||(26978607-26978652)
chr6 (325-386)||(27680161-27680222)
chr6 (325-386)||(27705164-27705225)
chr6 (325-389)||(26624482-26624546)
chr6 (325-389)||(26730459-26730523)
chr6 (160-200)||(26862626-26862666)
chr6 (346-386)||(28244027-28244067)
chr6 (326-389)||(26647691-26647754)
chr6 (326-389)||(26753659-26753722)
chr6 (346-389)||(28240589-28240632)
chr6 (352-386)||(2186064-2186098)
chr6 (260-390)||(26824965-26825095)
chr6 (45-179)||(27576082-27576216)
chr6 (325-386)||(27717409-27717470)
chr6 (325-389)||(26885278-26885342)
chr6 (325-369)||(27530231-27530275)
chr6 (82-138)||(28227920-28227976)
chr6 (306-362)||(29842926-29842982)
[»] chr2 (1 HSPs)
chr2 (29-389)||(17992122-17992482)
[»] chr1 (2 HSPs)
chr1 (34-388)||(26136808-26137162)
chr1 (260-389)||(28126582-28126711)
[»] chr4 (7 HSPs)
chr4 (265-389)||(18678463-18678587)
chr4 (265-389)||(18722988-18723112)
chr4 (82-390)||(5089856-5090164)
chr4 (265-389)||(18654380-18654504)
chr4 (325-389)||(18688529-18688593)
chr4 (346-389)||(18698303-18698346)
chr4 (346-389)||(18730407-18730450)
[»] chr5 (2 HSPs)
chr5 (34-200)||(16691787-16691953)
chr5 (346-380)||(16692099-16692133)
[»] scaffold0038 (4 HSPs)
scaffold0038 (82-200)||(35695-35813)
scaffold0038 (346-386)||(44189-44229)
scaffold0038 (346-389)||(40751-40794)
scaffold0038 (82-138)||(28418-28474)
[»] scaffold0349 (1 HSPs)
scaffold0349 (325-386)||(2449-2510)
[»] chr8 (1 HSPs)
chr8 (345-377)||(12589972-12590004)


Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 42)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 31 - 389
Target Start/End: Original strand, 25074784 - 25075142
Alignment:
Q  31 tttggacatgttagtgaagggattccaatcataagacgaaggctatgtcagaagaaagttctgctgattcttgatgacgttgactaactaaagcaattgc 130  Q
    ||||||||||||| |||||| |||||||||||||  |||||||||||||| ||||||||| || ||||||| |||||| ||||| |||||||||||||||    
T  25074784 tttggacatgttaatgaaggaattccaatcataaagcgaaggctatgtcaaaagaaagttttgttgattctcgatgacattgacaaactaaagcaattgc 25074883  T
Q  131 aggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgagataaacatttgttatcatctcacgggattnnnnnnnt 230  Q
    |||||||| ||||||||||||| | |||||||| |||||| | ||||||||||||||||||||| |||||||||||||||||||| ||||||       |    
T  25074884 aggttttggtcggagagcctagctggctcggtcgtggcagcagagtcatcattaccactcgagacaaacatttgttatcatctcatgggattacaaaaat 25074983  T
Q  231 atacgaagcagatggtttaaatgaggagcaagcccttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatatttta 330  Q
    |||||||||| ||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  25074984 atacgaagcatatggtttaaataaggaacaagctcttgaattgttaagaacaaaggcttttaaaagtaaaaaaaatgattcaagctatgattacatttta 25075083  T
Q  331 aaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  25075084 aaccgtgcaattaaatatgcttctggccttccattagctttagaagttgtgggttccaa 25075142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 26950630 - 26951015
Alignment:
Q  1 ctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaagggattccaatcataagacgaaggctatgtcagaagaaagttctgctgattc 100  Q
    ||||| ||||||||||||| | |||   | ||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||| || ||||||    
T  26950630 ctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccaatcataaaacgaaggctatatcagaagaaagttttgttgattc 26950729  T
Q  101 ttgatgacgttgactaactaaagcaattgcaggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgagataaaca 200  Q
    | ||||| |||||| || |||||||||||||||||||||| ||||||||| ||| ||| |||| |||||| | |||||||||||||||||| || |||||    
T  26950730 tcgatgatgttgacaaaataaagcaattgcaggttttgattggagagcctggttggcttggtcgtggcagcagagtcatcattaccactcgtgacaaaca 26950829  T
Q  201 tttgttatcatctcacgggattnnnnnnntatacgaagcagatggtttaaatgaggagcaagcccttgaattgttaagaacgaaggcttttaaaagtaac 300  Q
    ||||||||||| ||| ||||||       |||| |||||||||||||||||| |||| ||||| |||||||||||||||| || ||||||||||||||||    
T  26950830 tttgttatcatgtcatgggattaaaaaaatatatgaagcagatggtttaaataaggaacaagctcttgaattgttaagaatgatggcttttaaaagtaac 26950929  T
Q  301 aaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttc 386  Q
    |||||||||||||| ||||||  |||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||    
T  26950930 aaaaatgattcaaggtatgatagtattttaaaccgtgcagttaaatatgctgctggccttccattagctttagaagtagtgggttc 26951015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 26960011 - 26960400
Alignment:
Q  1 ctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaagggattccaatcataagacgaaggctatgtcagaagaaagttctgctgattc 100  Q
    ||||| ||||||||||||| | |||   | ||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||| || |||||     
T  26960011 ctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccaatcataaaacgaaggctatatcagaagaaagttttgttgattg 26960110  T
Q  101 ttgatgacgttgactaactaaagcaattgcaggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgagataaaca 200  Q
    | |||||||||||| || |||||||| |||||||||||||||||||| |||||| ||| |||| || ||| | ||| |||||||||||| |||| |||||    
T  26960111 tcgatgacgttgacaaaataaagcaagtgcaggttttgatcggagaggctagttggcttggtcgtgacagcagagtaatcattaccactagagacaaaca 26960210  T
Q  201 tttgttatcatctcacgggattnnnnnnn-tatacgaagcagatggtttaaatgaggagcaagcccttgaattgttaagaacgaaggcttttaaaagtaa 299  Q
     |||||||||||||| ||||||        ||||||||||| ||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||    
T  26960211 attgttatcatctcatgggattaaaaaaaatatacgaagcatatggtttaaataaggaacaagctcttgaattgttaagaacaaaggcttttaaaagtaa 26960310  T
Q  300 caaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
     ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26960311 gaaaaatgattcaagctatgattacattttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaa 26960400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 26636533 - 26636921
Alignment:
Q  1 ctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaagggattccaatcataagacgaaggctatgtcagaagaaagttctgctgattc 100  Q
    ||||| ||||||||||||| | |||   | ||||||||||||| |||||| |||||| |||||| ||||||||||| | ||||||||| | || ||||||    
T  26636533 ctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccagtcataaaacgaaggctatattagaagaaagatttgttgattc 26636632  T
Q  101 ttgatgacgttgactaactaaagcaattgcaggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgagataaaca 200  Q
    | |||||||||||| || |||||||||||||||||||||||||| || || ||| ||| |||| |||||| | ||| ||||| ||||||||||| |||||    
T  26636633 tcgatgacgttgacaaaataaagcaattgcaggttttgatcggacaggctggttggcttggtcgtggcagcagagtaatcatcaccactcgagacaaaca 26636732  T
Q  201 tttgttatcatctcacgggattnnnnnnntatacgaagcagatggtttaaatgaggagcaagcccttgaattgttaagaacgaaggcttttaaaagtaac 300  Q
     |||||||||||||| ||||||       | ||||||||| ||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||     
T  26636733 attgttatcatctcatgggattaaatttttttacgaagcatatggtttaaataaggaacaagctcttgaattgttaagaacaaaggcttttaaaagtaag 26636832  T
Q  301 aaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26636833 aaaaatgattcaagctatgattacattttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaa 26636921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 26742499 - 26742887
Alignment:
Q  1 ctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaagggattccaatcataagacgaaggctatgtcagaagaaagttctgctgattc 100  Q
    ||||| ||||||||||||| | |||   | ||||||||||||| |||||| |||||| |||||| ||||||||||| | ||||||||| | || ||||||    
T  26742499 ctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccagtcataaaacgaaggctatattagaagaaagatttgttgattc 26742598  T
Q  101 ttgatgacgttgactaactaaagcaattgcaggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgagataaaca 200  Q
    | |||||||||||| || |||||||||||||||||||||||||| || || ||| ||| |||| |||||| | ||| ||||| ||||||||||| |||||    
T  26742599 tcgatgacgttgacaaaataaagcaattgcaggttttgatcggacaggctggttggcttggtcgtggcagcagagtaatcatcaccactcgagacaaaca 26742698  T
Q  201 tttgttatcatctcacgggattnnnnnnntatacgaagcagatggtttaaatgaggagcaagcccttgaattgttaagaacgaaggcttttaaaagtaac 300  Q
     |||||||||||||| ||||||       | ||||||||| ||||||||||| |||| ||||| ||||||||||||||||| |||||||||||||||||     
T  26742699 attgttatcatctcatgggattaaatttttttacgaagcatatggtttaaataaggaacaagctcttgaattgttaagaacaaaggcttttaaaagtaag 26742798  T
Q  301 aaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26742799 aaaaatgattcaagctatgattacattttaaaccgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaa 26742887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 31 - 389
Target Start/End: Original strand, 26849629 - 26849987
Alignment:
Q  31 tttggacatgttagtgaagggattccaatcataagacgaaggctatgtcagaagaaagttctgctgattcttgatgacgttgactaactaaagcaattgc 130  Q
    ||||||||||||| |||||| |||||| |||||| ||||||||||| ||||||||||||| || |||||||  |||| |||||| ||||||| || |||     
T  26849629 tttggacatgttaatgaaggaattccagtcataaaacgaaggctatctcagaagaaagttttgttgattctcaatgatgttgacaaactaaatcagttgg 26849728  T
Q  131 aggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgagataaacatttgttatcatctcacgggattnnnnnnnt 230  Q
    ||  |||| ||||||||||| ||| ||| |||||||| || | ||||||||||||||||||||| |||  ||||||||||||||| || |||       |    
T  26849729 agaatttggtcggagagcctggttggcttggtcatggtagcagagtcatcattaccactcgagacaaatgtttgttatcatctcatggaattaaaaaaat 26849828  T
Q  231 atacgaagcagatggtttaaatgaggagcaagcccttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatatttta 330  Q
    |||||||||| ||||||||||  |||| ||||| ||||||||| ||||||||||| |||||||| ||||||||| |||| ||||||||||||| ||||||    
T  26849829 atacgaagcatatggtttaaacaaggaacaagctcttgaattggtaagaacgaagacttttaaatgtaacaaaactgatgcaagctatgattacatttta 26849928  T
Q  331 aaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    || |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  26849929 aatcgtgcagttaaatatgcttctggccttccattagctttagaagtagtgggttccaa 26849987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 26975838 - 26976130
Alignment:
Q  1 ctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaagggattccaatcataagacgaaggctatgtcagaagaaagttctgctgattc 100  Q
    ||||| ||||||||||||| | |||   | ||||||||||||| |||||| ||||||||||||| ||||||||||| ||||||||||||| || ||||||    
T  26975838 ctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccaatcataaaacgaaggctatatcagaagaaagttttgttgattc 26975937  T
Q  101 ttgatgacgttgactaactaaagcaattgcaggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgagataaaca 200  Q
    | |||||| ||||| || |||||||||||||||||||||||||||||||| ||| ||| ||||||||||| | ||||||||||||||||||||| |||||    
T  26975938 tcgatgacattgacaaaataaagcaattgcaggttttgatcggagagcctggttggcttggtcatggcagcagagtcatcattaccactcgagacaaaca 26976037  T
Q  201 tttgttatcatctcacgggattnnnnnnntatacgaagcagatggtttaaatgaggagcaagcccttgaattgttaagaacgaaggcttttaa 293  Q
     ||| |||||  |||  |||||       |||||||||||| |||||||||| | ||  |||| |||||||||||||||| |  |||||||||    
T  26976038 attgctatcaggtcatcggattgaaaagatatacgaagcaggtggtttaaataaagaagaagctcttgaattgttaagaaaggtggcttttaa 26976130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 31 - 389
Target Start/End: Original strand, 26812445 - 26812803
Alignment:
Q  31 tttggacatgttagtgaagggattccaatcataagacgaaggctatgtcagaagaaagttctgctgattcttgatgacgttgactaactaaagcaattgc 130  Q
    |||||||||||||||||||| ||||||||||||| |   |||||   ||| ||||||||| || ||||||| ||||| |||||| ||| ||||||||||     
T  26812445 tttggacatgttagtgaaggaattccaatcataaaagataggctgcatcaaaagaaagttttgttgattctcgatgatgttgacaaaccaaagcaattga 26812544  T
Q  131 aggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgagataaacatttgttatcatctcacgggattnnnnnnnt 230  Q
    |||||||| | ||||||||| ||| |||||||| ||| |||| ||||||||||||||||||||| | ||||||| |||||| ||| |||||        |    
T  26812545 aggttttggttggagagcctggttggctcggtcctggaagtagagtcatcattaccactcgagacagacatttgctatcatgtcatgggataactagaat 26812644  T
Q  231 atacgaagcagatggtttaaatgaggagcaagcccttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatatttta 330  Q
     || ||   |||||| ||||||||  |  |||| ||||||||||| | || || ||| ||||||||||||| || ||||||||| |||||||| ||||||    
T  26812645 ttatgacttagatggattaaatgacaaagaagctcttgaattgtttataaagatggcatttaaaagtaacataattgattcaagttatgattacatttta 26812744  T
Q  331 aaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    || || ||| | |||||| |||||||||||||| ||||| |||||||||||||||||||    
T  26812745 aatcgcgcagtaaaatatacttctggccttccattagctatagaagtagtgggttccaa 26812803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 36 - 389
Target Start/End: Complemental strand, 27664465 - 27664121
Alignment:
Q  36 acatgttagtgaagggattccaatcataagacgaaggctatgtcagaagaaagttctgctgattcttgatgacgttgactaactaaagcaattgcaggtt 135  Q
    ||||| || |||||| |||  |||||||| || ||||||||||| |||||||||| || |||||||||||||||||||| ||| ||| || ||| ||       
T  27664465 acatgataatgaaggaattgaaatcataaaacaaaggctatgtcggaagaaagttttgttgattcttgatgacgttgacaaaccaaatcagttggagaaa 27664366  T
Q  136 ttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgagataaacatttgttatcatctcacgggattnnnnnnntatacg 235  Q
    ||| ||||||||||| ||| | ||||||| || || | ||||||||||||||||||||| | | ||||||||||||  || |||||        ||||||    
T  27664365 ttggtcggagagcctggttggttcggtcaaggaagcagagtcatcattaccactcgagacagatatttgttatcatgccatgggataacaaaaatatacg 27664266  T
Q  236 aagcagatggtttaaatgaggagcaagcccttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatattttaaaccg 335  Q
    |||||||  |||||||| ||||  || | |||||||||||||||| || | |||||||||         ||||||| |||||||||||||||||||||||    
T  27664265 aagcagacagtttaaataaggaagaatctcttgaattgttaagaaagatgacttttaaaa---------atgattccagctatgattatattttaaaccg 27664175  T
Q  336 tgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    |||| || |||||||||||||||||||| |||||||| ||||||||||||||||    
T  27664174 tgcagttgaatatgcttctggccttccattagctttaaaagtagtgggttccaa 27664121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 95 - 387
Target Start/End: Original strand, 26938010 - 26938302
Alignment:
Q  95 tgattcttgatgacgttgactaactaaagcaattgcaggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgaga 194  Q
    |||||||||| || |||||  || | ||||| ||||||| | | || ||||| |||| || ||| |||||||| || ||||||||  |||||||||||||    
T  26938010 tgattcttgacgatgttgatgaattgaagcagttgcaggctataattggagaacctaattggcttggtcatggaagcaaagtcattgttaccactcgaga 26938109  T
Q  195 taaacatttgttatcatctcacgggattnnnnnnntatacgaagcagatggtttaaatgaggagcaagcccttgaattgttaagaacgaaggcttttaaa 294  Q
     ||||||||| |||||| ||| ||||||       |||| | || |||||| ||||| |||||  |||| |||||| | || ||   || |||||| |||    
T  26938110 caaacatttgctatcatgtcatgggattgaaagaatatatgtagtagatggcttaaaggaggaagaagctcttgaactatttaggtggatggctttcaaa 26938209  T
Q  295 agtaacaaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttcc 387  Q
    || ||||||| |||  |||| ||  || ||||  ||||||||||||||||||| ||||||||||||||| ||||||||||||| || ||||||    
T  26938210 agcaacaaaattgaaccaagttagtatgatataataaaccgtgcaattaaatacgcttctggccttccattagctttagaagttgtaggttcc 26938302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 31289155 - 31289365
Alignment:
Q  1 ctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaagggattccaatcataagacgaa-ggctatgtcagaagaaagttctgctgatt 99  Q
    ||||| ||||||||||||| | |||  || ||||||||||||| |||||| ||| ||||||||| | ||| |||||| ||||||||||||  || |||||    
T  31289155 ctctccaaatcaatcggatttgaaagacagtttggacatgttaatgaaggaatttcaatcataaaatgaagggctatctcagaagaaagtgttgttgatt 31289254  T
Q  100 cttgatgacgttgactaactaaagcaattgcaggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgagataaac 199  Q
    || |||||| | ||| ||| | || ||||| |   |||| ||||||||||| ||  ||| |||| ||| || | |||||||||||||||| |||| ||||    
T  31289255 ctcgatgacatagacaaacgagagaaattgaacaatttggtcggagagcctggtcggcttggtcctggaagcagagtcatcattaccacttgagacaaac 31289354  T
Q  200 atttgttatca 210  Q
    | ||| |||||    
T  31289355 aattgctatca 31289365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 282 - 386
Target Start/End: Original strand, 28140703 - 28140807
Alignment:
Q  282 gaaggcttttaaaagtaacaaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtg 381  Q
    |||||| ||||||| ||| |||  ||||||||| |||||  | ||||||||||||||| |||  ||||| |||||||||||| | ||||||||||||||     
T  28140703 gaaggcatttaaaaataataaagttgattcaagttatgagcacattttaaaccgtgcagttacttatgcctctggccttccattggctttagaagtagtt 28140802  T
Q  382 ggttc 386  Q
    |||||    
T  28140803 ggttc 28140807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 260 - 363
Target Start/End: Complemental strand, 28097479 - 28097376
Alignment:
Q  260 aagcccttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggcct 359  Q
    |||||||||||||| | ||   |||||||||||||  |||  ||  ||||||||| ||||| | |||||||||||||||||| || |||||| |||||||    
T  28097479 aagcccttgaattgcttaggtggaaggcttttaaagctaaacaagttgattcaagttatgagtgtattttaaaccgtgcaataaattatgctgctggcct 28097380  T
Q  360 tcca 363  Q
    ||||    
T  28097379 tcca 28097376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 28186626 - 28186669
Alignment:
Q  346 tatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  28186626 tatgcttctggccttccattggctttagaagtagtgggttccaa 28186669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 28296690 - 28296647
Alignment:
Q  346 tatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  28296690 tatgcttctggccttccattggctttagaagtagtgggttccaa 28296647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 28326710 - 28326753
Alignment:
Q  346 tatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  28326710 tatgcttctggccttccattggctttagaagtagtgggttccaa 28326753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 28504346 - 28504389
Alignment:
Q  346 tatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  28504346 tatgcttctggccttccattggctttagaagtagtgggttccaa 28504389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 28515383 - 28515426
Alignment:
Q  346 tatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    |||||||||||||||||| | |||||||||||||||||||||||    
T  28515383 tatgcttctggccttccattggctttagaagtagtgggttccaa 28515426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 386
Target Start/End: Complemental strand, 27592057 - 27591931
Alignment:
Q  260 aagcccttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggcct 359  Q
    |||| ||||||||||| ||   |||||||||||||| | | |||  |  |||||| |||||  | |||||||| |||||| ||  |||||||||||||||    
T  27592057 aagctcttgaattgttgaggtggaaggcttttaaaaatgagaaagttccttcaagttatgaagacattttaaagcgtgcagttgtatatgcttctggcct 27591958  T
Q  360 tccactagctttagaagtagtgggttc 386  Q
    |||| ||||  ||||||||||||||||    
T  27591957 tccattagcgatagaagtagtgggttc 27591931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 386
Target Start/End: Complemental strand, 27676656 - 27676530
Alignment:
Q  260 aagcccttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggcct 359  Q
    |||| ||||||||||| ||   |||||||||||||| | | |||  |  |||||| |||||  | |||||||| |||||| ||  |||||||||||||||    
T  27676656 aagctcttgaattgttgaggtggaaggcttttaaaaatgagaaagttccttcaagttatgaagacattttaaagcgtgcagttgtatatgcttctggcct 27676557  T
Q  360 tccactagctttagaagtagtgggttc 386  Q
    |||| ||||  ||||||||||||||||    
T  27676556 tccattagcgatagaagtagtgggttc 27676530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 28235533 - 28235651
Alignment:
Q  82 aagaaagttctgctgattcttgatgacgttgactaactaaagcaattgcaggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatca 181  Q
    ||||| |||||| ||||||| ||||| ||| || |||||||||||||||||||||||   |||||   |  || | | |||| ||| |||||||| ||||    
T  28235533 aagaaggttctgttgattctagatgatgttcacgaactaaagcaattgcaggttttggcgggagaaattgattggtttggtcctggaagtaaagtgatca 28235632  T
Q  182 ttaccactcgagataaaca 200  Q
    ||||||||||||| |||||    
T  28235633 ttaccactcgagacaaaca 28235651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 28326446 - 28326568
Alignment:
Q  82 aagaaagttctgctgattcttgatgacgttgactaactaaagcaattgcaggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatca 181  Q
    ||||| |||||| ||||||| ||||| ||| || |||| ||||||||||||||||||   ||||  | |  || | |||||| |||||||| ||| |||     
T  28326446 aagaaggttctgttgattctcgatgatgttcacgaactgaagcaattgcaggttttggctggaggacttgattggttcggtcctggcagtagagtgatcg 28326545  T
Q  182 ttaccactcgagataaacatttg 204  Q
    ||||||||||||| |||||||||    
T  28326546 ttaccactcgagacaaacatttg 28326568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 204
Target Start/End: Original strand, 28504082 - 28504204
Alignment:
Q  82 aagaaagttctgctgattcttgatgacgttgactaactaaagcaattgcaggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatca 181  Q
    ||||| |||||| ||||||| ||||| ||| || |||| ||||||||||||||||||   ||||  | |  || | |||||| |||||||| ||| |||     
T  28504082 aagaaggttctgttgattctcgatgatgttcacgaactgaagcaattgcaggttttggctggaggacttgattggttcggtcctggcagtagagtgatcg 28504181  T
Q  182 ttaccactcgagataaacatttg 204  Q
    ||||||||||||| |||||||||    
T  28504182 ttaccactcgagacaaacatttg 28504204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 386
Target Start/End: Original strand, 31285705 - 31285831
Alignment:
Q  260 aagcccttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggcct 359  Q
    |||| ||||||||||||||   || ||||||||||||| |||||  |  |||| | || ||  | ||||||||||||||| ||  |||| ||||||||||    
T  31285705 aagctcttgaattgttaaggtggatggcttttaaaagtgacaaagttccttcaggttacgaagacattttaaaccgtgcagttgcatattcttctggcct 31285804  T
Q  360 tccactagctttagaagtagtgggttc 386  Q
    |||| ||| | ||||||||||||||||    
T  31285805 tccattagttatagaagtagtgggttc 31285831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 386
Target Start/End: Original strand, 26978607 - 26978652
Alignment:
Q  341 ttaaatatgcttctggccttccactagctttagaagtagtgggttc 386  Q
    |||| ||||||||||| |||||| ||||||||||||||||||||||    
T  26978607 ttaactatgcttctggtcttccattagctttagaagtagtgggttc 26978652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 27680161 - 27680222
Alignment:
Q  325 attttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttc 386  Q
    ||||||||||||||| ||  |||||||| |||||||||  ||| ||||||||||||||||||    
T  27680161 attttaaaccgtgcagttgcatatgcttttggccttccgttagttttagaagtagtgggttc 27680222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 27705225 - 27705164
Alignment:
Q  325 attttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttc 386  Q
    ||||||||||||||| ||  ||||||||||||||||||  ||| |||||||||| |||||||    
T  27705225 attttaaaccgtgcagttgcatatgcttctggccttccgttagttttagaagtaatgggttc 27705164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 26624482 - 26624546
Alignment:
Q  325 attttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    ||||||||||||||| ||  ||||||||||||||||||  ||| ||||||| | |||||||||||    
T  26624482 attttaaaccgtgcagttgcatatgcttctggccttccgttagttttagaaattgtgggttccaa 26624546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 26730459 - 26730523
Alignment:
Q  325 attttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    ||||||||||||||| ||  ||||||||||||||||||  ||| ||||||| | |||||||||||    
T  26730459 attttaaaccgtgcagttgcatatgcttctggccttccgttagttttagaaattgtgggttccaa 26730523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 200
Target Start/End: Original strand, 26862626 - 26862666
Alignment:
Q  160 ggtcatggcagtaaagtcatcattaccactcgagataaaca 200  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  26862626 ggtcatggaagtagagtcatcattaccactcgagataaaca 26862666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 28244027 - 28244067
Alignment:
Q  346 tatgcttctggccttccactagctttagaagtagtgggttc 386  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  28244027 tatgcttctggccttccattggctttagaagtagtgggttc 28244067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 26647691 - 26647754
Alignment:
Q  326 ttttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    |||||||||||||| ||  ||||||||| ||||||||  ||| ||||||| |||||||||||||    
T  26647691 ttttaaaccgtgcagtttcatatgcttcaggccttcccttagttttagaaatagtgggttccaa 26647754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 326 - 389
Target Start/End: Original strand, 26753659 - 26753722
Alignment:
Q  326 ttttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    |||||||||||||| ||  ||||||||| ||||||||  ||| ||||||| |||||||||||||    
T  26753659 ttttaaaccgtgcagtttcatatgcttcaggccttcccttagttttagaaatagtgggttccaa 26753722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 28240589 - 28240632
Alignment:
Q  346 tatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||    
T  28240589 tatgcttctggcctaccattagctttagaagtagttggttccaa 28240632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 352 - 386
Target Start/End: Original strand, 2186064 - 2186098
Alignment:
Q  352 tctggccttccactagctttagaagtagtgggttc 386  Q
    |||||||||||| ||||||||||||||||||||||    
T  2186064 tctggccttccattagctttagaagtagtgggttc 2186098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 390
Target Start/End: Original strand, 26824965 - 26825095
Alignment:
Q  260 aagcccttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggcct 359  Q
    |||| ||||||||||||||   || ||||||||||| |||||||      ||||| |||||  | ||||||||||||||| ||  ||||||||| |||||    
T  26824965 aagctcttgaattgttaaggtggatggcttttaaaaataacaaagtaccgtcaagttatgaacacattttaaaccgtgcagtttcatatgcttcgggcct 26825064  T
Q  360 tccactagctttagaagtagtgggttccaat 390  Q
    |||  |||  |||||| ||||||||||||||    
T  26825065 tcccttagtattagaaatagtgggttccaat 26825095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 179
Target Start/End: Complemental strand, 27576216 - 27576082
Alignment:
Q  45 tgaagggattccaatcataagacgaaggctatgtcagaagaaagttctgctgattcttgatgacgttgactaactaaagcaattgcaggttttgatcgga 144  Q
    |||||| ||||||||||||| || |||||||  |   ||||||||| || ||||||| ||||| |||||| |||||||||| ||||    |||| | |||    
T  27576216 tgaaggaattccaatcataaaacaaaggctacatacaaagaaagttttgttgattctcgatgatgttgacaaactaaagcagttgcgaactttggttgga 27576117  T
Q  145 gagcctagttcgctcggtcatggcagtaaagtcat 179  Q
    |||| | ||| |||||||| ||| |||| ||||||    
T  27576116 gagcttggttggctcggtcctggtagtagagtcat 27576082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 27717470 - 27717409
Alignment:
Q  325 attttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttc 386  Q
    ||||||||||||||| ||  ||||||||||||||||||  ||| | ||||| ||||||||||    
T  27717470 attttaaaccgtgcagttgcatatgcttctggccttccgttagttatagaaatagtgggttc 27717409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 389
Target Start/End: Original strand, 26885278 - 26885342
Alignment:
Q  325 attttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    ||||||||||||||| ||  ||||||||| ||||||||  ||| | ||||| |||||||||||||    
T  26885278 attttaaaccgtgcagtttcatatgcttcgggccttcctttagttatagaaatagtgggttccaa 26885342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 369
Target Start/End: Complemental strand, 27530275 - 27530231
Alignment:
Q  325 attttaaaccgtgcaattaaatatgcttctggccttccactagct 369  Q
    ||||||||||||||| |||  |||||||||||||||||| |||||    
T  27530275 attttaaaccgtgcacttacttatgcttctggccttccattagct 27530231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 28227920 - 28227976
Alignment:
Q  82 aagaaagttctgctgattcttgatgacgttgactaactaaagcaattgcaggttttg 138  Q
    |||||||||||  ||||||| ||||| ||| || ||||||||||||||| |||||||    
T  28227920 aagaaagttctattgattctcgatgatgttcacaaactaaagcaattgcgggttttg 28227976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 362
Target Start/End: Complemental strand, 29842982 - 29842926
Alignment:
Q  306 tgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggccttcc 362  Q
    |||||||||||||||| | |||||| ||||||||||    |||||||||||||||||    
T  29842982 tgattcaagctatgatgacattttagaccgtgcaatagcttatgcttctggccttcc 29842926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 29 - 389
Target Start/End: Complemental strand, 17992482 - 17992122
Alignment:
Q  29 aatttggacatgttagtgaagggattccaatcataagacgaaggctatgtcagaagaaagttctgctgattcttgatgacgttgactaactaaagcaatt 128  Q
    ||||||||||||||| |||||| |||||||||||||  | |||||||||||| |||||||||||  ||||||| |||||| | ||| |||||||||||||    
T  17992482 aatttggacatgttaatgaaggtattccaatcataaagcaaaggctatgtcaaaagaaagttctcttgattctcgatgacatcgacaaactaaagcaatt 17992383  T
Q  129 gcaggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgagataaacatttgttatcatctcacgggattnnnnnn 228  Q
    |||||||||| | ||||||||| ||| ||| |||| |||||| | ||||||||||||||||||||| |||||||||||| ||| ||| ||||||          
T  17992382 gcaggttttggttggagagcctggttggcttggtcgtggcagcagagtcatcattaccactcgagacaaacatttgttaacatgtcatgggattaaaaca 17992283  T
Q  229 ntatacgaagcagatggtttaaatgaggagcaagcccttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatattt 328  Q
     |||| |||| |||||| |||||||||||  |||| |||||| |||||||   |||||| |||||| | ||| ||| |||||| || ||| | |||||||    
T  17992282 atatatgaagtagatggattaaatgaggaagaagctcttgaactgttaaggtggaaggcatttaaaggcaacgaaattgattctagttataactatattt 17992183  T
Q  329 taaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    ||||||||| | ||||||||||| ||||||| ||| |||||||||||||||||||||||||    
T  17992182 taaaccgtgtagttaaatatgctgctggcctcccattagctttagaagtagtgggttccaa 17992122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 34 - 388
Target Start/End: Original strand, 26136808 - 26137162
Alignment:
Q  34 ggacatgttagtgaagggattccaatcataagacgaaggctatgtcagaagaaagttctgctgattcttgatgacgttgactaactaaagcaattgcagg 133  Q
    |||||||||||| |||| ||||||||||||| |  |||||||  ||| |||||| || || ||||||| |||||||||||| | |||||||| |||||||    
T  26136808 ggacatgttagtaaaggaattccaatcataaaagaaaggctacatcaaaagaaaattttgttgattctcgatgacgttgacaagctaaagcagttgcagg 26136907  T
Q  134 ttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgagataaacatttgttatcatctcacgggattnnnnnnntata 233  Q
    ||||| | ||||||||||||| ||| |||| ||| |||| ||||||||||||||| ||||| ||||||||| |||||| ||| ||||||       ||||    
T  26136908 ttttggttggagagcctagttggcttggtcctgggagtagagtcatcattaccacccgagacaaacatttgctatcatgtcatgggattaaaagaatata 26137007  T
Q  234 cgaagcagatggtttaaatgaggagcaagcccttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatattttaaac 333  Q
     ||||  |||   |||||| ||||  |||| ||||||||||| ||   || |||||||||||||||| | ||||| ||||| ||||||||||||||||||    
T  26137008 tgaagtcgatttcttaaataaggatgaagctcttgaattgtttaggtggatggcttttaaaagtaaccacaatgactcaagttatgattatattttaaac 26137107  T
Q  334 cgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttcca 388  Q
     ||||| ||||||||||||||||||||||  ||||||||||||||||||||||||    
T  26137108 agtgcagttaaatatgcttctggccttccgttagctttagaagtagtgggttcca 26137162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 389
Target Start/End: Complemental strand, 28126711 - 28126582
Alignment:
Q  260 aagcccttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggcct 359  Q
    |||| ||||||||||| ||   || ||||||||||  |||||||  |  |||||| |||||| || |||||||||| ||| ||  ||||||||| |||||    
T  28126711 aagcacttgaattgttgaggtggatggcttttaaacataacaaagttccttcaagttatgatgatgttttaaaccgggcagtttcatatgcttcaggcct 28126612  T
Q  360 tccactagctttagaagtagtgggttccaa 389  Q
    |||  ||| | ||||| |||||||||||||    
T  28126611 tcccttagttatagaaatagtgggttccaa 28126582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 389
Target Start/End: Complemental strand, 18678587 - 18678463
Alignment:
Q  265 cttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggccttccac 364  Q
    ||||||||||| ||   || ||||||||||||| |||||  |  |||||| |||||  | |||||||| |||||| ||   ||||||||||||||||||     
T  18678587 cttgaattgttgaggtggatggcttttaaaagttacaaagttccttcaagttatgaagagattttaaaacgtgcagttgtgtatgcttctggccttccat 18678488  T
Q  365 tagctttagaagtagtgggttccaa 389  Q
    ||||| |||||||||||||||||||    
T  18678487 tagctatagaagtagtgggttccaa 18678463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 389
Target Start/End: Complemental strand, 18723112 - 18722988
Alignment:
Q  265 cttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggccttccac 364  Q
    ||||||||||| ||   || ||||||||||||| |||||  |  |||||| |||||  | ||||||||||| ||| ||   ||||||||||||||||||     
T  18723112 cttgaattgttgaggtggatggcttttaaaagttacaaagttccttcaagttatgaagagattttaaaccgagcagttgcgtatgcttctggccttccat 18723013  T
Q  365 tagctttagaagtagtgggttccaa 389  Q
    ||||| |||||||||||||||||||    
T  18723012 tagctatagaagtagtgggttccaa 18722988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 390
Target Start/End: Complemental strand, 5090164 - 5089856
Alignment:
Q  82 aagaaagttctgctgattcttgatgacgttgactaactaaagcaattgcaggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatca 181  Q
    |||||||||||  ||||||| |||||  ||||| |||| || ||| | |||||||||  |||||| |||  || | | |||| |||||| | ||||||||    
T  5090164 aagaaagttcttttgattctcgatgatattgacaaactgaaacaactacaggttttggccggagaacctgattggtttggtcttggcagcagagtcatca 5090065  T
Q  182 ttaccactcgagataaacatttgttatcatctcacgggattnnnnnnntatacgaagcagatggtttaaatgaggagcaagcccttgaattgttaagaac 281  Q
    ||||||||||||| ||||| ||| ||  || ||| ||||||        |||||||| |||||||||||||||| |  |||| ||| |||| |||||       
T  5090064 ttaccactcgagacaaacacttgctaaaatgtcatgggattgatataacatacgaagtagatggtttaaatgagaacgaagctcttcaattattaaggtg 5089965  T
Q  282 gaaggcttttaaaagtaacaaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtg 381  Q
    |||||||||||||| ||  |    | || |||| |||||    |||||||||||||   | |  |||||||||||||||||| | ||||||||||| |||    
T  5089964 gaaggcttttaaaaatagtactgttaatccaagttatgaaggaattttaaaccgtgtggtaacttatgcttctggccttccattggctttagaagttgtg 5089865  T
Q  382 ggttccaat 390  Q
    |||||||||    
T  5089864 ggttccaat 5089856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 265 - 389
Target Start/End: Complemental strand, 18654504 - 18654380
Alignment:
Q  265 cttgaattgttaagaacgaaggcttttaaaagtaacaaaaatgattcaagctatgattatattttaaaccgtgcaattaaatatgcttctggccttccac 364  Q
    ||||||||||| ||   || ||||||||||| | |||||  |  |||||| |||||  | ||||||||||||||| ||   ||||||||||||||||||     
T  18654504 cttgaattgttgaggtggatggcttttaaaatttacaaagttccttcaagttatgaagagattttaaaccgtgcagttgcgtatgcttctggccttccat 18654405  T
Q  365 tagctttagaagtagtgggttccaa 389  Q
    ||||| ||||||| |||||||||||    
T  18654404 tagctatagaagtcgtgggttccaa 18654380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 325 - 389
Target Start/End: Complemental strand, 18688593 - 18688529
Alignment:
Q  325 attttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    ||||||||||||||| |    |||||||||||||||||| ||||| |||||||||||||||||||    
T  18688593 attttaaaccgtgcagtcgtgtatgcttctggccttccattagctatagaagtagtgggttccaa 18688529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 18698346 - 18698303
Alignment:
Q  346 tatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  18698346 tatgcttctggccttccattagctctagaagtagtgggttccaa 18698303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 346 - 389
Target Start/End: Complemental strand, 18730450 - 18730407
Alignment:
Q  346 tatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    |||||||||||||||||| ||||| |||||||||||||||||||    
T  18730450 tatgcttctggccttccattagctctagaagtagtgggttccaa 18730407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 200
Target Start/End: Original strand, 16691787 - 16691953
Alignment:
Q  34 ggacatgttagtgaagggattccaatcataagacgaaggctatgtcagaagaaagttctgctgattcttgatgacgttgactaactaaagcaattgcagg 133  Q
    ||||||||||||||||| |||||||| |||| || |||||||   || || || |||||  ||||||| ||||| |||||  | | |||||||||||| |    
T  16691787 ggacatgttagtgaaggaattccaataataaaacaaaggctacaacaaaaaaaggttcttttgattctcgatgatgttgatgagcaaaagcaattgcaag 16691886  T
Q  134 ttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatcattaccactcgagataaaca 200  Q
    || || | ||||||||   || | | |||| ||| |||| ||||||||||||||||||||| |||||    
T  16691887 ttatggttggagagcccgattggtttggtcctggaagtagagtcatcattaccactcgagacaaaca 16691953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 346 - 380
Target Start/End: Original strand, 16692099 - 16692133
Alignment:
Q  346 tatgcttctggccttccactagctttagaagtagt 380  Q
    |||||||||||||||||| ||||||||||||||||    
T  16692099 tatgcttctggccttccattagctttagaagtagt 16692133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 35695 - 35813
Alignment:
Q  82 aagaaagttctgctgattcttgatgacgttgactaactaaagcaattgcaggttttgatcggagagcctagttcgctcggtcatggcagtaaagtcatca 181  Q
    ||||| |||||| ||||||| ||||| ||| || |||||||||||||||||||||||   |||||   |  || | | |||| ||| |||||||| ||||    
T  35695 aagaaggttctgttgattctagatgatgttcacgaactaaagcaattgcaggttttggcgggagaaattgattggtttggtcctggaagtaaagtgatca 35794  T
Q  182 ttaccactcgagataaaca 200  Q
    ||||||||||||| |||||    
T  35795 ttaccactcgagacaaaca 35813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 44189 - 44229
Alignment:
Q  346 tatgcttctggccttccactagctttagaagtagtgggttc 386  Q
    |||||||||||||||||| | ||||||||||||||||||||    
T  44189 tatgcttctggccttccattggctttagaagtagtgggttc 44229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 346 - 389
Target Start/End: Original strand, 40751 - 40794
Alignment:
Q  346 tatgcttctggccttccactagctttagaagtagtgggttccaa 389  Q
    |||||||||||||| ||| |||||||||||||||| ||||||||    
T  40751 tatgcttctggcctaccattagctttagaagtagttggttccaa 40794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 138
Target Start/End: Original strand, 28418 - 28474
Alignment:
Q  82 aagaaagttctgctgattcttgatgacgttgactaactaaagcaattgcaggttttg 138  Q
    |||||||||||  ||||||| ||||| ||| || ||||||||||||||| |||||||    
T  28418 aagaaagttctattgattctcgatgatgttcacaaactaaagcaattgcgggttttg 28474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 386
Target Start/End: Complemental strand, 2510 - 2449
Alignment:
Q  325 attttaaaccgtgcaattaaatatgcttctggccttccactagctttagaagtagtgggttc 386  Q
    ||||||||||||||| ||  ||||||||||||||||||  ||| | ||||| ||||||||||    
T  2510 attttaaaccgtgcagttgcatatgcttctggccttccgttagttatagaaatagtgggttc 2449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 12589972 - 12590004
Alignment:
Q  345 atatgcttctggccttccactagctttagaagt 377  Q
    ||||||||||||||||||||||||||| |||||    
T  12589972 atatgcttctggccttccactagctttggaagt 12590004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University