View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2844_high_21 (Length: 237)
Name: NF2844_high_21
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2844_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 3665505 - 3665724
Alignment:
| Q |
1 |
acactatccaagaatattttactctatccctcnnnnnnntaatattttactctacatattttcaaaatagatcgttggactgaatatttaattatattac |
100 |
Q |
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| T |
3665505 |
acactatccaagaatattttact--atccctcaaaaaaataatattttactctacatattttcaaaatagatcgttggactgaatatttaattatattac |
3665602 |
T |
|
| Q |
101 |
cagatcatctataaaaaaccattttacataatctaaaacttgaataatgagtcattttatatattattgtgatgtgatgcgtcaagactaatacacattt |
200 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3665603 |
cagatcatctataaaaaaacattttacataatctaaaacttgaataatgagtcattttatatattattgtgatgtgatgcgtcaagactaatacacattt |
3665702 |
T |
|
| Q |
201 |
agatgattacatcgatgtagtt |
222 |
Q |
| |
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||||||||||||||||||||| |
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| T |
3665703 |
ggatgattacatcgatgtagtt |
3665724 |
T |
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