View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2844_high_3 (Length: 504)
Name: NF2844_high_3
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2844_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 15 - 283
Target Start/End: Complemental strand, 2487167 - 2486899
Alignment:
| Q |
15 |
caatttcaaaagaatccaattaaagaatgacaaaacaattatgcttgcttaataacaaagcaagtacaagcaaagattcctaaacatgatttaagaaaaa |
114 |
Q |
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| T |
2487167 |
caatttcaaaagaatccaattaaagaatgacaaaacaattatgcttgcttaataacaaagcaagtacaagcaaagattcctaaacatgatttaagaaaaa |
2487068 |
T |
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| Q |
115 |
cagtgcaaagtacatagaaataaccttaaaatacacagaatagttaagagagtagcaaaatttgattggatgttttatattttacttggtaagcaagtta |
214 |
Q |
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| T |
2487067 |
cagtgcaaagtacatagaaataaccttaaaatacacagaatagttaagagagtagcaaaatttgattggatgttttatattttacttggtaagcaagtta |
2486968 |
T |
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| Q |
215 |
attaagagaataaaattgtagaatcattactaatcaaaaaggcatgtataaaagttaattactttgaga |
283 |
Q |
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| T |
2486967 |
attaagagaataaaattgtagaatcattactaatcaaaaaggcatgtataaaagttaattactttgaga |
2486899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 278 - 495
Target Start/End: Complemental strand, 2486878 - 2486661
Alignment:
| Q |
278 |
ttgagaatagtggaattgaattggttaattagtcaatgttcttttcaactaccaaaagaagacaaacaaaatagagagcaaagaactcaccctatacact |
377 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2486878 |
ttgaaaatagtggaattgaattggttaattagtcaatgttcttttcaactaccaaaagaagacaaacaaaatagagagcaaagaactcaccctatacact |
2486779 |
T |
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| Q |
378 |
taaggttgtattgtattcacacaaagtcaatgatgatatttttcaccaataattatgaatccttgaacttgaaggagaggatttatagtccctcatgcac |
477 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2486778 |
taaggttgtattgtattcacacaaagtcaatgatgagatttttcaccaataattatgaatcgttgaacttgaaggagaggatttatagtccctcatgcac |
2486679 |
T |
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| Q |
478 |
aataatgataagaataat |
495 |
Q |
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| T |
2486678 |
aataatgataagaataat |
2486661 |
T |
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