View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2844_high_4 (Length: 467)
Name: NF2844_high_4
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2844_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 8e-62; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 93 - 269
Target Start/End: Complemental strand, 37434010 - 37433834
Alignment:
| Q |
93 |
aaaatttgctaaaacctaggactatttgaagtgagatttaatcaaggatgtcctcattcacattaggaagcatcagctctaccaaccaactacatgttaa |
192 |
Q |
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| T |
37434010 |
aaaatgtgccaaaacctaggtctatttgaagtgagatttaattaaggatgctctaattcacattaagaagcatcagctctaccaaccaactacatgttaa |
37433911 |
T |
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| Q |
193 |
gaatcttgtctcaaatactttatcatactatctgagcacatgtgaaagaaaattaaccacaaaaacttggtatttaa |
269 |
Q |
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| T |
37433910 |
aaatcttgtctcaaatactttatcatactatctaagcacatgtgaaagaaaattaactaccaaaacatagtatttaa |
37433834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 37434198 - 37434121
Alignment:
| Q |
11 |
atactttctaaaatgtgctcaaaaatttattgcttcgtttttgaacatttttatccaactgtcttc-agtttttatgg |
87 |
Q |
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| T |
37434198 |
atactttctaaaatgtgctcaagactttattgtttcgtttttgaacatttttatccaattgtctactagtttttatgg |
37434121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 37438710 - 37438653
Alignment:
| Q |
11 |
atactttctaaaatgtgctcaaaaatttattgcttcgtttttgaacatttttatccaa |
68 |
Q |
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| T |
37438710 |
atactttctaaattatgctcaagactttattgcttcatttttggacatttttatccaa |
37438653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 37706488 - 37706440
Alignment:
| Q |
136 |
aaggatgtcctcattcacattaggaagcatcagctctaccaaccaacta |
184 |
Q |
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| T |
37706488 |
aaggatgccctcattcacattaagaagcaatagctctaccaatcaacta |
37706440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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