View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2844_high_6 (Length: 436)
Name: NF2844_high_6
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2844_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 32001568 - 32001974
Alignment:
| Q |
20 |
ttgaactttcagcaagatgatgatattatggcggctgtggaagcatttagagcaagcggtggatttgataataatattaacacccctcctatttcaacaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32001568 |
ttgaactttcagcaagatgatgatattatggcggctgtggaagcatttagagcaagcggtggatttgataataatattaacacccctcctatttcaacaa |
32001667 |
T |
|
| Q |
120 |
atgttcttcaagttcttgagggtggtaatca---ggaaaatttggatggaagcatgatgtgtaacgtgaatctcgaggagaataagcattattggaatag |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32001668 |
atgttcttcaagttcttgagggtggtgatcatcaggaaaatttggatggaagcatgatatgtaacgtgaatctcgaggagaataagcattattggaatag |
32001767 |
T |
|
| Q |
217 |
catacttggtttggttaatgaatctgatgatatgaacagtatcctataacgaagctattgatcataggtagagctagctagctagctatagtagctgttt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32001768 |
catacttggtttggttaatgaatctgatgatatgaacagtatcctataacgaagctattgatcataggtagagctagctagctagctatagtagctgttt |
32001867 |
T |
|
| Q |
317 |
ggctatagggagtacttaattaggatagttcaatgagttgataataatgcaatgtcggcttcatttggaccaaaaaacacgtcttagttgttaccttagc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32001868 |
ggctatagggagtacttaattaggatagttcaatgagttgataataatgcaatgtcggcttcatttggaccaaaaaacacgtcttagttgttaccttagc |
32001967 |
T |
|
| Q |
417 |
ttcttct |
423 |
Q |
| |
|
||||||| |
|
|
| T |
32001968 |
ttcttct |
32001974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 20 - 423
Target Start/End: Original strand, 31942609 - 31943015
Alignment:
| Q |
20 |
ttgaactttcagcaagatgatgatattatggcggctgtggaagcatttagagcaagcggtggatttgataataatattaacacccctcctatttcaacaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31942609 |
ttgaactttcagcaagatgatgatattatggcggctgtggaagcatttagagcaagcggtggttttgataataatattaacacccctcctatttcaacaa |
31942708 |
T |
|
| Q |
120 |
atgttcttcaagttcttgagggtggtaatca---ggaaaatttggatggaagcatgatgtgtaacgtgaatctcgaggagaataagcattattggaatag |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31942709 |
atgttcttcaagttcttgagggtggtgatcatcaggaaaatttggatggaagcatgatttgtaacgtgaatctcgaggagaataagcattattggaatag |
31942808 |
T |
|
| Q |
217 |
catacttggtttggttaatgaatctgatgatatgaacagtatcctataacgaagctattgatcataggtagagctagctagctagctatagtagctgttt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31942809 |
catacttggtttggttaatgaatctgatgatatgaacagtatcctataacgaagctattgatcataggtagagctagctagctagctatagtagctgttt |
31942908 |
T |
|
| Q |
317 |
ggctatagggagtacttaattaggatagttcaatgagttgataataatgcaatgtcggcttcatttggaccaaaaaacacgtcttagttgttaccttagc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31942909 |
ggctatagggagtacttaattaggatagttcaatgagttgataataatgcaatgtcggcttcatttggaccaaaaaacacgtcttagttgttaccttagc |
31943008 |
T |
|
| Q |
417 |
ttcttct |
423 |
Q |
| |
|
||||||| |
|
|
| T |
31943009 |
ttcttct |
31943015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 91 - 300
Target Start/End: Original strand, 32004565 - 32004779
Alignment:
| Q |
91 |
taatattaacacccctcctatttcaacaaatgttcttcaagtt------cttgagggtggtaatcaggaaaatttggatggaagcatgatgtgtaacgtg |
184 |
Q |
| |
|
||||||||| || |||||||||||||||||| ||||| ||||| ||||||||| || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32004565 |
taatattaatacacctcctatttcaacaaatattcttgaagttaaatttcttgagggtagtgatcaggaaaatttggatggaagcatgatgtgtaacgtg |
32004664 |
T |
|
| Q |
185 |
aatctcgaggagaataagcattattggaatagcatacttggtttggttaatgaatctgatgatatgaacagtatcctataacgaagctattgatcatagg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||| ||| |||||| |||||||| ||||||||| |
|
|
| T |
32004665 |
aatctcgaggagaataagcattattggaatagca-acttggtttggttaatgaatctcatgatttgaacattatgctataatgaagctatagatcatagg |
32004763 |
T |
|
| Q |
285 |
tagagctagctagcta |
300 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32004764 |
tagagctagctagcta |
32004779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 315 - 423
Target Start/End: Original strand, 32004889 - 32004999
Alignment:
| Q |
315 |
ttggctatagggagtacttaattaggatagttcaatgagttgataataatgcaatgtcggcttcatttggac--caaaaaacacgtcttagttgttacct |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||| || | || |||||||||| |
|
|
| T |
32004889 |
ttggctatagggagtacttaattaggatagttcaatgagttgataataatgcaatgtcgacttcattttgacaacaaaaataacttattggttgttacct |
32004988 |
T |
|
| Q |
413 |
tagcttcttct |
423 |
Q |
| |
|
|||| |||||| |
|
|
| T |
32004989 |
tagcctcttct |
32004999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University