View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2844_high_7 (Length: 433)

Name: NF2844_high_7
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2844_high_7
NF2844_high_7
[»] chr2 (2 HSPs)
chr2 (231-358)||(24453901-24454028)
chr2 (180-231)||(24453826-24453877)
[»] chr5 (4 HSPs)
chr5 (238-356)||(13457814-13457933)
chr5 (238-356)||(31233476-31233594)
chr5 (174-231)||(31233625-31233682)
chr5 (175-230)||(13457727-13457782)
[»] chr3 (3 HSPs)
chr3 (238-344)||(23233752-23233859)
chr3 (275-356)||(33330676-33330755)
chr3 (174-230)||(23233891-23233946)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 7e-59; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 231 - 358
Target Start/End: Original strand, 24453901 - 24454028
Alignment:
Q  231 gttttacctctatttatagagtacttaactatttgtaatggtatgtttgacgttataaacatatttctgtctttcaatataacatttccataatactttt 330  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24453901 gttttagctctatttatagagtactgaactatttgtaatggtatgtttgatgttataaacatatttctgtctttcaatataacatttccataatactttt 24454000  T
Q  331 tctctcctatccctataaaaccaacatc 358  Q
    ||||||||||||||||||||||||||||    
T  24454001 tctctcctatccctataaaaccaacatc 24454028  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 24453826 - 24453877
Alignment:
Q  180 ttagtgagttgtttttcaattatgttttgttttaagggcaataattttaggg 231  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  24453826 ttagggagttgtttttcaattatgttttgttttaaaggcaataattttaggg 24453877  T

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Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 238 - 356
Target Start/End: Original strand, 13457814 - 13457933
Alignment:
Q  238 ctctatttatagagtacttaactatttgtaatggtatgtttgacgttataaacatatttctgtctttcaatataacatttccataatactttttctctcc 337  Q
    |||||||||||||| ||| || | ||||||||||| || |||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||     
T  13457814 ctctatttatagagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttctgtcttccaatatatcatttccataatactttttctctcg 13457913  T
Q  338 tatccc-tataaaaccaaca 356  Q
    |||||| | |||||||||||    
T  13457914 tatcccttttaaaaccaaca 13457933  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 356
Target Start/End: Complemental strand, 31233594 - 31233476
Alignment:
Q  238 ctctatttatagagtacttaactatttgtaatggtatgtttgacgttataaacatatttctgtctttcaatataacatttccataatactttttctctcc 337  Q
    ||||||||||| || ||| || | ||||||||||| || |||| ||||||||||||||| |||||   |||||| ||||| |||||   ||||||||||     
T  31233594 ctctatttataaagcactgaagtgtttgtaatggtgtgcttgatgttataaacatatttttgtctacaaatatatcattttcataaatttttttctctca 31233495  T
Q  338 tatccctataaaaccaaca 356  Q
    ||||||| |||||||||||    
T  31233494 tatccctttaaaaccaaca 31233476  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 31233682 - 31233625
Alignment:
Q  174 gagacattagtgagttgtttttcaattatgttttgttttaagggcaataattttaggg 231  Q
    |||| |||||||||||||||||||||||||||||||||| | | ||||||||||||||    
T  31233682 gagatattagtgagttgtttttcaattatgttttgttttgaagacaataattttaggg 31233625  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 230
Target Start/End: Original strand, 13457727 - 13457782
Alignment:
Q  175 agacattagtgagttgtttttcaattatgttttgttttaagggcaataattttagg 230  Q
    ||||||||||||||||||||||| |||| ||||||||||| |  ||||||||||||    
T  13457727 agacattagtgagttgtttttcagttatcttttgttttaaagataataattttagg 13457782  T

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Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 238 - 344
Target Start/End: Complemental strand, 23233859 - 23233752
Alignment:
Q  238 ctctatttatagagtacttaactatt-tgtaatggtatgtttgacgttataaacatatttctgtctttcaatataacatttccataatactttttctctc 336  Q
    |||||||||||| | ||| || |||| ||||||||| ||||||| ||||||||| ||||||||||||  |||||| ||||||||||||||||||||||||    
T  23233859 ctctatttatagggcactaaagtattgtgtaatggtgtgtttgatgttataaacttatttctgtcttctaatatatcatttccataatactttttctctc 23233760  T
Q  337 ctatccct 344  Q
     |||||||    
T  23233759 atatccct 23233752  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 356
Target Start/End: Original strand, 33330676 - 33330755
Alignment:
Q  275 gtttgacgttataaacatatttctgtctttcaatataacatttccataatactttttctctcctatccctataaaaccaaca 356  Q
    |||||| |||||||||||||||||||||| | ||||  |||||||||| ||| ||||||||| ||| ||| |||||||||||    
T  33330676 gtttgatgttataaacatatttctgtcttccgatatgtcatttccatattac-ttttctctcatat-cctttaaaaccaaca 33330755  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 23233946 - 23233891
Alignment:
Q  174 gagacattagtgagttgtttttcaattatgttttgttttaagggcaataattttagg 230  Q
    ||||||| ||||||||||||| || |||||||||||||||| | |||||||||||||    
T  23233946 gagacatcagtgagttgtttt-cagttatgttttgttttaaagacaataattttagg 23233891  T

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