View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2844_low_10 (Length: 432)
Name: NF2844_low_10
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2844_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 4 - 417
Target Start/End: Complemental strand, 43656724 - 43656315
Alignment:
| Q |
4 |
ctatattattctgaaactcccaaataatcaatacaatctagtgtcaaataagaataaagtcttccttgatgattaggtaaacaaattaagacaaacatac |
103 |
Q |
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| T |
43656724 |
ctatattattctgaaactcccaaataatcaatacaatctagtgtcaaataagaataaagtcttccttgatgattaggtaaacaaattaagacaaacatac |
43656625 |
T |
|
| Q |
104 |
aaaataagaggatcaaatttgttggcattacaatagatatccctataaccaactatacacttcatatcatactcttgctgggacaattcacacaaacaaa |
203 |
Q |
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| T |
43656624 |
aaaataagaggatcaaatttgttggcattacaagagatatccctataaccaactatacacttcatatcatactcttgctgggacaattcacacaaacaaa |
43656525 |
T |
|
| Q |
204 |
ataaatgcacctatgattcttgctactgagaatgattaacacaacagttgcactagcgtccagtaagtctctccttctatatgtagcaggttgctttagt |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43656524 |
ataaatgcacctatgattcttgctactgagaatgattaacacaacagttgcactagcgtccagtaagtctctccttctatatgtagcaggttgctttagt |
43656425 |
T |
|
| Q |
304 |
cagtaatctagtgcaatcctcaaattctactagattgcaagaaagatagttaaggatgatcaaattaccaagaaaaaagtgaagagctagcgaggatgtt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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| T |
43656424 |
cagtaatctagtgcaatcctcaaattctactagattgcaagaaagatagttaaggatgatcaaattaccaagaaaaaagtgaag----agcgagggtgtt |
43656329 |
T |
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| Q |
404 |
ttcataaccaacat |
417 |
Q |
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|||||||||||||| |
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| T |
43656328 |
ttcataaccaacat |
43656315 |
T |
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