View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2844_low_13 (Length: 404)
Name: NF2844_low_13
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2844_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 8 - 349
Target Start/End: Original strand, 7997804 - 7998144
Alignment:
| Q |
8 |
taagtgaaattgatgttctattatccttagaggtaggcacatgattcaagtgcaatttaaaactccatttatccgtagagaaactcagaacttcaggtag |
107 |
Q |
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| T |
7997804 |
taagtgaaattgatgttctattatccttagaggtaggcacatgattcaagtgcaatttaaaactccatttatctgtagagaaactcagaacttcaggtag |
7997903 |
T |
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| Q |
108 |
aaacattggacaaaattaaaagtgtatcggcaagacctctaaatcataattaaattagctcgaacgaatctaattctaaaaacattggacaaatttgttt |
207 |
Q |
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| T |
7997904 |
aaacattggacaaaattaaaagtgtatcggcaagacctctaaatcataattaaattggctcaaacgaatctaattctaaaaacattggacaaatttgttt |
7998003 |
T |
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| Q |
208 |
ccgagacggatgtaaataaagcctttaaatagagcatgaattagtccaatggcccctatcctccatgatttatgtggatgaaaatcaaaataagaaaagt |
307 |
Q |
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| T |
7998004 |
ccgagacggatgtaaataaagcctttaaatagagcatgaattagtccaatggcccctatcctccatga-taatgtggatgaaaatcaaaataagaaaact |
7998102 |
T |
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| Q |
308 |
aaatacatttatgagcttaaaaacagaatcaaggaagcaagg |
349 |
Q |
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| T |
7998103 |
aaatacatttatgagcttaaaaacagaatcaaggaagcaagg |
7998144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 180 - 254
Target Start/End: Original strand, 7979048 - 7979122
Alignment:
| Q |
180 |
attctaaaaacattggacaaatttgtttccgagacggatgtaaataaagcctttaaatagagcatgaattagtcc |
254 |
Q |
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|||||||||| ||| || |||||||| | || |||||||||||||||||||| |||||| ||||||||||||| |
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| T |
7979048 |
attctaaaaatatttgataaatttgtgtttgatacggatgtaaataaagccttctaatagaacatgaattagtcc |
7979122 |
T |
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