View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2844_low_15 (Length: 386)
Name: NF2844_low_15
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2844_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 49672942 - 49672609
Alignment:
| Q |
1 |
taatagaaaaaagtagataaaattaagtcatacagcaattaattcctcctaaaaggctaaaaacattaagcatgacaatcattctatttaactgnnnnnn |
100 |
Q |
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| T |
49672942 |
taatagaaaaaagtagataaaataaagtcatacagcaattaattcctcctaaaaggctaaaaacattaagcatgacaatcattctatttaactgtatttt |
49672843 |
T |
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| Q |
101 |
nnnnnnnnnnnnnnaaattcgaagagtatcttctctcatggatagatatgaactatcataaaatataatagtatcgtgtagtttaatcaatccaacctag |
200 |
Q |
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| T |
49672842 |
ttattttttttt--aacttcgaagagtatcttctctcatggatagatatgaactatcataaaatataatagtatcgtgtagtttagtcaatccaacctag |
49672745 |
T |
|
| Q |
201 |
taagataatgtttgattgttgta---------------tttgatatattgtcgaggacttatctggaacaaatttttatcttaaaacacttgaagtatga |
285 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49672744 |
taagataatgtttgattgttgtattttctaccggtagttttgatatattgtcgaggacttatctggaacaaatttttatcttaaaacaattgaagtatga |
49672645 |
T |
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| Q |
286 |
cactatggttttggcatcattttgcaatgttattac |
321 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
49672644 |
cactatgattttggcatcattttgcaatgttattac |
49672609 |
T |
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