View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2844_low_17 (Length: 381)
Name: NF2844_low_17
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2844_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 41268795 - 41268436
Alignment:
| Q |
17 |
ataactcctgcagtataaccaggttgaagcttaatggaagcaccaaagtagccagatcgaaacgggcgaaccgatttaaatccacttcctgtttttacca |
116 |
Q |
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| T |
41268795 |
ataactcctgcagtataaccaggttgaagcttaatggaagcaccaaagtagccagatcgaaacgggcgaaccgatttaaatccacttcctgcttttacca |
41268696 |
T |
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| Q |
117 |
tnnnnnnnngcaacgataataattaaatttcaatgatatttaactagtagaaaacatgtgtaactgatgatcagactcagaacctgaggttctatcaagc |
216 |
Q |
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| T |
41268695 |
taaaaaaa-gcaacgataataattaaatttcaatgatatttaactagtagaaaacatgtgtaactgatgatcagactcagaacctgaggttctatcaagc |
41268597 |
T |
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| Q |
217 |
caaatagttaatgcattttgttctagtctttggtgttgagggccccaacggtttgtaaaacctttgtaaaagttcatagacttgaactttgaacttggcc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41268596 |
caaatagttaatgcattttgttctagtctttggtgttgagggccccaacggtttgtaaaacctttgtaaaagttcatagacttgaactttgaacttggcc |
41268497 |
T |
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| Q |
317 |
agtagccaggtgaaggtggccaataagcattgcttgaaaatgtcattaagaataatatagc |
377 |
Q |
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| T |
41268496 |
agtagccaggtgaaggtggccaataagcattgcttgaaaatgtcattaagaataaaatagc |
41268436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 198 - 371
Target Start/End: Original strand, 27686036 - 27686209
Alignment:
| Q |
198 |
acctgaggttctatcaagccaaatagttaatgcattttgttctagtctttggtgttgagggccccaacggtttgtaaaacctttgtaaaagttcatagac |
297 |
Q |
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| T |
27686036 |
acctgaggttctatcaagccaaatagttgttccatgttgatccatgctttggtgttgaggtccccaaaggtttctataaccattgtaaaagctcatagac |
27686135 |
T |
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| Q |
298 |
ttgaactttgaacttggccagtagccaggtgaaggtggccaataagcattgcttgaaaatgtcattaagaataa |
371 |
Q |
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||| || |||||||||||||| || || |||||||||||||| |||||||||||| | | ||| |||||||| |
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| T |
27686136 |
ctgactttggaacttggccagtaaccgggggaaggtggccaataggcattgcttgaagaagccataaagaataa |
27686209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 27685788 - 27685877
Alignment:
| Q |
17 |
ataactcctgcagtataaccaggttgaagcttaatggaagcaccaaagtagccagatcgaaacgggcgaaccgatttaaatccacttcct |
106 |
Q |
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| T |
27685788 |
ataactcctgcagtgtagccaggatgaagcttaatcgaagcgccaaagtatcccgatcgaaatggacgattcgacttgaatccacttcct |
27685877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 21085406 - 21085456
Alignment:
| Q |
16 |
aataactcctgcagtataaccaggttgaagcttaatggaagcaccaaagta |
66 |
Q |
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||||||||| |||||||| ||||| ||||||||||| | |||||||||||| |
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| T |
21085406 |
aataactccagcagtatagccaggatgaagcttaattgcagcaccaaagta |
21085456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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