View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2844_low_19 (Length: 328)
Name: NF2844_low_19
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2844_low_19 |
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| [»] scaffold0495 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 3665402 - 3665074
Alignment:
| Q |
1 |
aagtctaaaaaatgacactatgtaaaaaatccataaattatactgttgtgatttgaacttcttcatattttta----ccctcttaactttccctaaagtt |
96 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
3665402 |
aagtctaaaaaatgatactatgtaaaaaatccataaattatactgttgtgatttgaacttcttcatatttttaattaccctcttaattttccctaaagtt |
3665303 |
T |
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| Q |
97 |
caaaaaagtgatttagaggttgannnnnnncatgttattcttgta--cataattagaaaattaaaatatgacatttcttataaaattagaattttcgtac |
194 |
Q |
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| T |
3665302 |
caaaaaaatgatttagaggttgatttttttcatgttatttttgtagacataattagaaaattaaaatatgacatttcttgtaaaattagaattttcgtac |
3665203 |
T |
|
| Q |
195 |
agattaattattttgatttttcaac---aacgtataaaattacaactttgttccgactaaacatatattcacgagtcaaattttgttcccttacaaatat |
291 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3665202 |
agattaattattttgatttttcaaccaaaacgtgcaaaattacaactttgttcagactaaacatatattcacgagtcaaattttgttcccttacaaatat |
3665103 |
T |
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| Q |
292 |
agctcgtatttgtcacgatgatgatgatg |
320 |
Q |
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| T |
3665102 |
agctcgtatttgtcacgatgatgatgatg |
3665074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 17480069 - 17479986
Alignment:
| Q |
202 |
ttattttgatttttcaac---aacgtataaaattacaactttgttccgactaaacatatattcacgagtcaaattttgttccct |
282 |
Q |
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| T |
17480069 |
ttattttgatttttcaaccaaaatgtgtaaaattgcaattttcttctgagtaaacatatactcacgagtcaaattttgttccct |
17479986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 279
Target Start/End: Original strand, 35852468 - 35852546
Alignment:
| Q |
204 |
attttgatttttcaac---aacgtataaaattacaactttgttccgactaaacatatattcacgagtcaaattttgttc |
279 |
Q |
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| T |
35852468 |
attttgatttttcaaccaaaacatatgaaattgcaattttgttccgaataagcaaatactcacgagtaaaattttgttc |
35852546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 202 - 280
Target Start/End: Original strand, 10842119 - 10842200
Alignment:
| Q |
202 |
ttattttgatttttcaac---aacgtataaaattacaactttgttccgactaaacatatattcacgagtcaaattttgttcc |
280 |
Q |
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| T |
10842119 |
ttattttgattttttaactaaaacatacaaaattacaattttgttccaagtaaacatatagtcacgtgtcaaattttgttcc |
10842200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 280
Target Start/End: Complemental strand, 51782300 - 51782247
Alignment:
| Q |
227 |
aaaattacaactttgttccgactaaacatatattcacgagtcaaattttgttcc |
280 |
Q |
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| T |
51782300 |
aaaattgcaattttgttccgagtaaacatatattcatgggtcaaattttgttcc |
51782247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0495 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0495
Description:
Target: scaffold0495; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 8631 - 8585
Alignment:
| Q |
228 |
aaattacaactttgttccgactaaacatatattcacgagtcaaattt |
274 |
Q |
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| T |
8631 |
aaattgcaattttgttctgagtaaacatatattcacgagtcaaattt |
8585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 274
Target Start/End: Complemental strand, 10231911 - 10231865
Alignment:
| Q |
228 |
aaattacaactttgttccgactaaacatatattcacgagtcaaattt |
274 |
Q |
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| T |
10231911 |
aaattgcaattttgttctgagtaaacatatattcacgagtcaaattt |
10231865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 21556321 - 21556367
Alignment:
| Q |
236 |
actttgttccgactaaacatatattcacgagtcaaattttgttccct |
282 |
Q |
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| T |
21556321 |
actttgttccgagtaagcatatattaacgggtcaaattttgttccct |
21556367 |
T |
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