View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2844_low_23 (Length: 262)

Name: NF2844_low_23
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2844_low_23
NF2844_low_23
[»] chr5 (4 HSPs)
chr5 (184-232)||(34542458-34542506)
chr5 (14-95)||(34542284-34542369)
chr5 (20-66)||(36609196-36609242)
chr5 (25-61)||(9740932-9740968)
[»] chr7 (4 HSPs)
chr7 (26-82)||(23682522-23682578)
chr7 (20-61)||(44452107-44452148)
chr7 (20-61)||(46716179-46716220)
chr7 (25-61)||(676442-676478)
[»] chr3 (3 HSPs)
chr3 (24-61)||(54537760-54537797)
chr3 (24-87)||(24313525-24313588)
chr3 (35-87)||(32521376-32521428)
[»] chr2 (3 HSPs)
chr2 (24-87)||(6334741-6334804)
chr2 (22-61)||(39647840-39647879)
chr2 (20-61)||(25622534-25622574)
[»] chr1 (1 HSPs)
chr1 (20-61)||(27934794-27934835)
[»] chr8 (1 HSPs)
chr8 (25-61)||(9735374-9735410)
[»] chr4 (1 HSPs)
chr4 (33-61)||(53397071-53397099)


Alignment Details
Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 184 - 232
Target Start/End: Original strand, 34542458 - 34542506
Alignment:
Q  184 tcaagaataactttagaaaatgggacctaaatgtcgtgtggataaggtt 232  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34542458 tcaagaataactttagaaaatgggacctaaatgtcgtgtggataaggtt 34542506  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 14 - 95
Target Start/End: Original strand, 34542284 - 34542369
Alignment:
Q  14 atataatgatatttttaa----taaataattatttaatttagaatgtttaaatagtactttgaggacactcgttaacacaacactt 95  Q
    ||||||||||||||||||    |||||||||| |||||||| |||||||||||||| ||||||||| |||| ||||||| ||||||    
T  34542284 atataatgatatttttaaataataaataattacttaatttaaaatgtttaaatagtgctttgaggatactcattaacacgacactt 34542369  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 36609196 - 36609242
Alignment:
Q  20 tgatatttttaataaataattatttaatttagaatgtttaaatagta 66  Q
    |||||||||| |  |||||||||||||||||||||||||||| ||||    
T  36609196 tgatatttttgaagaataattatttaatttagaatgtttaaaaagta 36609242  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 9740968 - 9740932
Alignment:
Q  25 tttttaataaataattatttaatttagaatgtttaaa 61  Q
    ||||||| ||||||||| |||||||||||||||||||    
T  9740968 tttttaaaaaataattacttaatttagaatgtttaaa 9740932  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 23682522 - 23682578
Alignment:
Q  26 ttttaataaataattatttaatttagaatgtttaaatagtactttgaggacactcgt 82  Q
    |||||| ||||||||||||||||||||||||||||| ||||| ||| || |||||||    
T  23682522 ttttaaaaaataattatttaatttagaatgtttaaagagtaccttgggggcactcgt 23682578  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 44452107 - 44452148
Alignment:
Q  20 tgatatttttaataaataattatttaatttagaatgtttaaa 61  Q
    ||||||||||||  |||||||| |||||||||||||||||||    
T  44452107 tgatatttttaaataataattacttaatttagaatgtttaaa 44452148  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 46716220 - 46716179
Alignment:
Q  20 tgatatttttaataaataattatttaatttagaatgtttaaa 61  Q
    ||||||||||||  |||||||||||||||||||||| |||||    
T  46716220 tgatatttttaaagaataattatttaatttagaatggttaaa 46716179  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 676442 - 676478
Alignment:
Q  25 tttttaataaataattatttaatttagaatgtttaaa 61  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  676442 tttttaataaataattacttattttagaatgtttaaa 676478  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 54537797 - 54537760
Alignment:
Q  24 atttttaataaataattatttaatttagaatgtttaaa 61  Q
    |||||||| |||||||||||||||||||||||||||||    
T  54537797 atttttaaaaaataattatttaatttagaatgtttaaa 54537760  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 24313588 - 24313525
Alignment:
Q  24 atttttaataaataattatttaatttagaatgtttaaatagtactttgaggacactcgttaaca 87  Q
    ||||||||  ||||||| |||||||||||||||||||| ||| |   |||||||||||||||||    
T  24313588 atttttaaagaataattgtttaatttagaatgtttaaagagtgccccgaggacactcgttaaca 24313525  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 32521376 - 32521428
Alignment:
Q  35 ataattatttaatttagaatgtttaaatagtactttgaggacactcgttaaca 87  Q
    |||||| ||||| |||||||| ||||| ||| |||||||| ||||||||||||    
T  32521376 ataattttttaaattagaatgcttaaagagtgctttgagggcactcgttaaca 32521428  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 87
Target Start/End: Original strand, 6334741 - 6334804
Alignment:
Q  24 atttttaataaataattatttaatttagaatgtttaaatagtactttgaggacactcgttaaca 87  Q
    |||||||| |||||||| |||||||||| ||||||||| |||  |  |||||||||||||||||    
T  6334741 atttttaaaaaataattttttaatttagcatgtttaaagagtgttccgaggacactcgttaaca 6334804  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 39647840 - 39647879
Alignment:
Q  22 atatttttaataaataattatttaatttagaatgtttaaa 61  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  39647840 atatttttaaaaaataattacttaatttagaatgtttaaa 39647879  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 25622574 - 25622534
Alignment:
Q  20 tgatatttttaataaataattatttaatttagaatgtttaaa 61  Q
    |||||||||||| ||||||||| |||||||||||||||||||    
T  25622574 tgatatttttaa-aaataattacttaatttagaatgtttaaa 25622534  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 27934794 - 27934835
Alignment:
Q  20 tgatatttttaataaataattatttaatttagaatgtttaaa 61  Q
    ||||||||||||  |||||||||||||||||||||| |||||    
T  27934794 tgatatttttaaataataattatttaatttagaatgcttaaa 27934835  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 61
Target Start/End: Original strand, 9735374 - 9735410
Alignment:
Q  25 tttttaataaataattatttaatttagaatgtttaaa 61  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  9735374 tttttaaaaaataattattaaatttagaatgtttaaa 9735410  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 61
Target Start/End: Original strand, 53397071 - 53397099
Alignment:
Q  33 aaataattatttaatttagaatgtttaaa 61  Q
    |||||||||||||||||||||||||||||    
T  53397071 aaataattatttaatttagaatgtttaaa 53397099  T

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