View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2844_low_32 (Length: 212)
Name: NF2844_low_32
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2844_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 123; Significance: 2e-63; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 22040707 - 22040865
Alignment:
| Q |
19 |
tcaaatgtggtcgagactcttattcatcgcacatcatgctcttttgagcatcatgcaacttctttgcttttgatttatttgtcttttactatttcactct |
118 |
Q |
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| T |
22040707 |
tcaaatgtggttgagactcttattcatcgcacatcatgttcttttgagcatcatgcaacttctttgcttttgatttatttgtgttttactatttcactct |
22040806 |
T |
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| Q |
119 |
ccaatctaacaagatcccattttgagttgtagatctgcaattccaacttcaaacatatc |
177 |
Q |
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| T |
22040807 |
ccaatctaacaagagccctttttgagttgtagatctgcaatcctaactttaaagatatc |
22040865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 23 - 152
Target Start/End: Original strand, 22037814 - 22037943
Alignment:
| Q |
23 |
atgtggtcgagactcttattcatcgcacatcatgctcttttgagcatcatgcaacttctttgcttttgatttatttgtcttttactatttcactctccaa |
122 |
Q |
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| T |
22037814 |
atgtggtcgagactcttacggatggcacatcgtgcccttttgagcatcatgcaacttctttgcttttgatttatttgtgttttactatttcacactccaa |
22037913 |
T |
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| Q |
123 |
tctaacaagatcccattttgagttgtagat |
152 |
Q |
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| T |
22037914 |
tctaacaagatccctttttgagttgtagat |
22037943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 100 - 171
Target Start/End: Original strand, 22023951 - 22024022
Alignment:
| Q |
100 |
tcttttactatttcactctccaatctaacaagatcccattttgagttgtagatctgcaattccaacttcaaa |
171 |
Q |
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| T |
22023951 |
tcttttactatttcactctccaatctaacaagagtccattttgaattgtagatctgcaatacaaacttcaaa |
22024022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 63 - 129
Target Start/End: Complemental strand, 10204499 - 10204434
Alignment:
| Q |
63 |
tgagcatcatgcaacttctttgcttttgatttatttgtcttttactatttcactctccaatctaaca |
129 |
Q |
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| T |
10204499 |
tgagcattatgcaacttctt-gcttttgatttatttgtgttttactatttcactctccaatctaaca |
10204434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 3233648 - 3233537
Alignment:
| Q |
59 |
cttttgagcatcatgcaacttctttgcttttgatttatttgtcttttactatttcactctccaatctaacaagatcccattttgagttgtagatctgcaa |
158 |
Q |
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||||||||||| |||||||||||| |||||||||||| |||| |||| ||||||||||| | |||||||| | || |||||| || |||||||||| |
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| T |
3233648 |
cttttgagcattatgcaacttctt-gcttttgatttagttgtgttttgatatttcactcttccatctaacacaagtcctttttgaactgcagatctgcaa |
3233550 |
T |
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| Q |
159 |
ttccaacttcaaa |
171 |
Q |
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| T |
3233549 |
tcccaacttcaaa |
3233537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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