View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2844_low_4 (Length: 499)

Name: NF2844_low_4
Description: NF2844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2844_low_4
NF2844_low_4
[»] scaffold0011 (2 HSPs)
scaffold0011 (261-482)||(218916-219136)
scaffold0011 (339-482)||(190702-190845)
[»] chr8 (4 HSPs)
chr8 (17-235)||(38387880-38388096)
chr8 (45-226)||(46157-46336)
chr8 (31-197)||(4489642-4489807)
chr8 (66-236)||(1579099-1579268)
[»] chr4 (4 HSPs)
chr4 (35-235)||(26500196-26500394)
chr4 (26-236)||(10388522-10388730)
chr4 (20-236)||(1799107-1799321)
chr4 (179-236)||(42218984-42219039)
[»] chr3 (6 HSPs)
chr3 (20-236)||(45181555-45181769)
chr3 (20-236)||(16285027-16285241)
chr3 (20-229)||(17324063-17324270)
chr3 (122-236)||(3968557-3968670)
chr3 (154-236)||(4000135-4000215)
chr3 (26-115)||(23087591-23087680)
[»] chr1 (4 HSPs)
chr1 (26-191)||(4397382-4397547)
chr1 (20-232)||(38709918-38710127)
chr1 (70-232)||(4391572-4391732)
chr1 (174-235)||(39908881-39908940)
[»] chr5 (10 HSPs)
chr5 (28-236)||(35847058-35847265)
chr5 (46-236)||(42742268-42742455)
chr5 (101-231)||(39368828-39368956)
chr5 (28-236)||(2707022-2707228)
chr5 (65-235)||(3204246-3204413)
chr5 (20-150)||(25362318-25362448)
chr5 (17-191)||(29685830-29686004)
chr5 (45-146)||(40377644-40377745)
chr5 (60-191)||(25341702-25341834)
chr5 (20-88)||(17218822-17218890)
[»] chr2 (3 HSPs)
chr2 (57-236)||(4397373-4397550)
chr2 (26-236)||(37128835-37129043)
chr2 (20-236)||(41958194-41958407)
[»] chr7 (4 HSPs)
chr7 (48-191)||(6003378-6003521)
chr7 (146-235)||(27993568-27993655)
chr7 (57-191)||(25153224-25153360)
chr7 (147-235)||(2570122-2570208)


Alignment Details
Target: scaffold0011 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 261 - 482
Target Start/End: Complemental strand, 219136 - 218916
Alignment:
Q  261 aagtaacaaacttgtagtccacaaagataaacactcatatacaaacannnnnnnnatatatatagatctgaggatggacattataatactttgtccaaag 360  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||        ||||| ||||||||||||| |||||||||||||||||||||||||    
T  219136 aagtaaaaaacttgtagtccacaaagataaacactcatatagaaacattttttt-atatacatagatctgaggaaggacattataatactttgtccaaag 219038  T
Q  361 gatgcctttgcatcccaattgattatgatagaaaatttgagggacacactcatgataaaatatggcaagatcttgtgtgtgtttctaatttatatggtac 460  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  219037 gatgccattgcatcccaattgattatgatagaaaatttgagggacacactcatgataaaatatggcaagatcttgtgtgtgtttctaattcatatggtac 218938  T
Q  461 ccattgcaattgccatccctat 482  Q
    ||||||||||||||||||||||    
T  218937 ccattgcaattgccatccctat 218916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 339 - 482
Target Start/End: Complemental strand, 190845 - 190702
Alignment:
Q  339 cattataatactttgtccaaaggatgcctttgcatcccaattgattatgatagaaaatttgagggacacactcatgataaaatatggcaagatcttgtgt 438  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  190845 cattataatactttgtccaaaggatgccattgcatcccaattgattatgatagaaaatttgagggacacactcatgataaaatatggcaagatcttgtgt 190746  T
Q  439 gtgtttctaatttatatggtacccattgcaattgccatccctat 482  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  190745 gtgtttctaattcatatggtacccattgcaattgccatccctat 190702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 1e-51; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 38388096 - 38387880
Alignment:
Q  17 catcaacggtgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaac 116  Q
    ||||||| ||||||||||| ||||||| ||||||||||| ||||||| ||||||||||| ||||| |||||| | |||||||  || |||| |||||||     
T  38388096 catcaacagtgatcaattaggcacccgatagtgattttgcttcaaacgttcagcttcgaccaccactcaagtcctagtctatcagatgagacatcacaat 38387997  T
Q  117 agactaaaagtacctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaa 216  Q
    || ||||||| ||||||||||||||||| |||| ||||| ||| |||||| ||| || |||||||||||||||||||||||  |||||  |||| |||||    
T  38387996 agcctaaaaggacctgagtcacaaacttgctcctgaccttgaatcaaaagtgattggcccacaagactcccgacataagtc--aaaaaggcacccctcaa 38387899  T
Q  217 ctcacgaaccaccagagca 235  Q
    |||||||||||||||||||    
T  38387898 ctcacgaaccaccagagca 38387880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 45 - 226
Target Start/End: Original strand, 46157 - 46336
Alignment:
Q  45 tagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagtacctgagtcacaaactt 144  Q
    ||||||||||| ||||||| |||| ||| || ||||| |||||||||||||||| |||||||| |||||||||  ||||||| |||||||||| ||||||    
T  46157 tagtgattttgcttcaaacgttcaactttgaccaccactcaagttccagtctatcggaggagacatcacaacaacctaaaaggacctgagtcagaaactt 46256  T
Q  145 actcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaacc 226  Q
     |||||||||| ||| |||||||||| || ||||||||||||||||| |||||  |||||  |||| |||||||||||||||    
T  46257 gctcccgacctggaatcaaaagcgattggcccacaagactcccgacacaagtc--aaaaaggcacccctcaactcacgaacc 46336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 31 - 197
Target Start/End: Original strand, 4489642 - 4489807
Alignment:
Q  31 aattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagtacc 130  Q
    |||||||||| || || |||||||| ||||||| || |||||| | ||||| |||||||||||||||| |||||||| ||||||| || ||||||| | |    
T  4489642 aattaagcactcgataatgattttgcttcaaacgtttagcttctaccaccactcaagttccagtctatcggaggagacatcacaaaagcctaaaaggatc 4489741  T
Q  131 tgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtc 197  Q
     |||| ||||||| ||| ||||||| |||  |||| |||| |  |||| |||||||||||| |||||    
T  4489742 cgagttacaaactaact-ccgaccttgaataaaaaacgattgccccactagactcccgacacaagtc 4489807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 66 - 236
Target Start/End: Complemental strand, 1579268 - 1579099
Alignment:
Q  66 tcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagtacctgagtcacaa-acttactcccgacctcgaagcaaa 164  Q
    |||||||||| ||||| ||||||| | | |||| | | |||| |||||||||  ||| ||| ||||||||||||| |||| |||||||| | ||| ||||    
T  1579268 tcagcttcgaccaccactcaagtttcggcctatcgcaagagacatcacaacaacctagaaggacctgagtcacaagacttgctcccgactttgaatcaaa 1579169  T
Q  165 agcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaaccaccagagcag 236  Q
    || |||||| ||||||||||||| ||| ||||  |||| |  || | |||||||||||||||||||||||||    
T  1579168 agtgatcggcccacaagactcccaacacaagt--aaaagaggcatccctcaactcacgaaccaccagagcag 1579099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 35 - 235
Target Start/End: Original strand, 26500196 - 26500394
Alignment:
Q  35 aagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagtacctgag 134  Q
    ||||||||| || |||||||| ||||||| ||||||||||| ||||| ||||||||| |||||| |||||||| |||||||||| ||||||| || ||||    
T  26500196 aagcacccgatattgattttgcttcaaacgttcagcttcgaccaccactcaagttccggtctatcggaggagacatcacaacagcctaaaaggacttgag 26500295  T
Q  135 tcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaaccaccagagc 234  Q
    |||||||||| |||||||||||||| ||||||||||||  |||||||||| |||||| |||||  |||||  |||| ||||||||||||||||| |||||    
T  26500296 tcacaaacttgctcccgacctcgaatcaaaagcgatcgacccacaagacttccgacacaagtc--aaaaaggcacccctcaactcacgaaccactagagc 26500393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 10388730 - 10388522
Alignment:
Q  26 tgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaa 125  Q
    ||||||||||  ||||||  ||| |||||| ||||||| || |||||||| ||||| ||||| ||| ||||||  ||||||| |||||||||| ||||||    
T  10388730 tgatcaattacacacccgacagtaattttgcttcaaacgtttagcttcgaccaccactcaagatccggtctatcagaggagacatcacaacagcctaaaa 10388631  T
Q  126 gtacctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaac 225  Q
    | |||||||||| |||||| |||||||||||||| |||||| |||||| ||||||||||| ||||  |||||  ||||| ||| | |||||||||||||     
T  10388630 ggacctgagtcataaacttgctcccgacctcgaatcaaaagtgatcggcccacaagactctcgacgcaagtc--aaaaagacatccctcaactcacgaag 10388533  T
Q  226 caccagagcag 236  Q
    ||| |||||||    
T  10388532 cactagagcag 10388522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 1799321 - 1799107
Alignment:
Q  20 caacggtgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacaga 119  Q
    |||| ||||||||  | ||||||| || |||| ||| |||||||  |||||||||| ||||| |||| ||   || ||| |||||||| ||||||| ||     
T  1799321 caacagtgatcaaaaaggcacccgataatgatgttgcttcaaacgatcagcttcgaccaccactcaaattttggtttatcggaggagacatcacaatagc 1799222  T
Q  120 ctaaaagtacctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactc 219  Q
    ||||||| ||||||| ||||||||| |||| ||||| ||| |||||||| | |||| ||||||||||  ||| |||||  |||||  |||| ||||||||    
T  1799221 ctaaaaggacctgagacacaaacttgctcctgacctagaatcaaaagcgtttggtcaacaagactccttacacaagtc--aaaaaggcacccctcaactc 1799124  T
Q  220 acgaaccaccagagcag 236  Q
    |||||||||| ||||||    
T  1799123 acgaaccaccggagcag 1799107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 236
Target Start/End: Complemental strand, 42219039 - 42218984
Alignment:
Q  179 aagactcccgacataagtccaaaaaacacaccgctcaactcacgaaccaccagagcag 236  Q
    ||||||||| ||||||||| |||| ||||  | |||||||||||||||||||||||||    
T  42219039 aagactcccaacataagtcgaaaagacac--cactcaactcacgaaccaccagagcag 42218984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 98; Significance: 5e-48; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 45181769 - 45181555
Alignment:
Q  20 caacggtgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacaga 119  Q
    |||||||||||||||| ||||  | ||||||| |||||||| |  || |||||||| ||||| | ||||||| |||||| | |||||| ||||||||||     
T  45181769 caacggtgatcaattaggcacttgatagtgatattgattcagatgtttagcttcgaccaccacttaagttccggtctatcgaaggagacatcacaacagc 45181670  T
Q  120 ctaaaagtacctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactc 219  Q
    ||||||| ||||||||||||||||| || ||||||||||| |||||||||| || ||||||||||||||||| |||||  |||||  |||| ||||||||    
T  45181669 ctaaaaggacctgagtcacaaacttgcttccgacctcgaatcaaaagcgattggcccacaagactcccgacaaaagtc--aaaaaggcacccctcaactc 45181572  T
Q  220 acgaaccaccagagcag 236  Q
    |||||||||||||||||    
T  45181571 acgaaccaccagagcag 45181555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 16285241 - 16285027
Alignment:
Q  20 caacggtgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacaga 119  Q
    |||| ||||| ||||| ||||||| ||||||||||| ||||||  |||||||| || ||||| ||||||||| || ||| |||||||   |||||||||     
T  16285241 caacagtgattaattaggcacccgatagtgattttgcttcaaatgttcagctttgaccaccactcaagttccggtttatcggaggagccgtcacaacagc 16285142  T
Q  120 ctaaaagtacctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactc 219  Q
    ||||||| ||||||||| ||||||| |||||||||||||| ||||||||||||| |||||||||||| ||||  ||||  |||||  |||| ||||||||    
T  16285141 ctaaaaggacctgagtcgcaaacttgctcccgacctcgaatcaaaagcgatcggcccacaagactccagacactagtc--aaaaaggcacccctcaactc 16285044  T
Q  220 acgaaccaccagagcag 236  Q
    ||||||||| |||||||    
T  16285043 acgaaccacaagagcag 16285027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 17324063 - 17324270
Alignment:
Q  20 caacggtgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacaga 119  Q
    |||| ||||||||||   |||| | ||||||||||| ||||||| ||||||||||| ||||| || ||||||||| ||| |||||||| ||||||| ||     
T  17324063 caacagtgatcaattcgacacctgatagtgattttgcttcaaacgttcagcttcgaccaccactctagttccagtatatcggaggagacatcacaatagc 17324162  T
Q  120 ctaaaagtacctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactc 219  Q
     |||||| |||| ||||| |||||| |||||||||||||| |||||| |||||| ||||||||||| ||||||||||  ||||||  |||| ||||||||    
T  17324163 ttaaaaggacctaagtcagaaacttgctcccgacctcgaatcaaaagagatcggcccacaagactcacgacataagt--aaaaaaggcacccctcaactc 17324260  T
Q  220 acgaaccacc 229  Q
    ||||||||||    
T  17324261 acgaaccacc 17324270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 3968557 - 3968670
Alignment:
Q  122 aaaagtacctgagtcacaaactta-ctcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactca 220  Q
    ||||| |||||||||| |||  || |||| || ||||||||||||||||| ||||||| |||||||||||| || ||  |  ||  |||| |||||||||    
T  3968557 aaaagaacctgagtcaaaaaactagctcctgatctcgaagcaaaagcgattggtccaccagactcccgacacaaatc--atcaaggcacccctcaactca 3968654  T
Q  221 cgaaccaccagagcag 236  Q
    ||||||||||||||||    
T  3968655 cgaaccaccagagcag 3968670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 154 - 236
Target Start/End: Complemental strand, 4000215 - 4000135
Alignment:
Q  154 ctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaaccaccagagcag 236  Q
    ||||||||||||||||| ||||||| |||||||||||| || ||  |  ||  |||| |||||||||||||||||||||||||    
T  4000215 ctcgaagcaaaagcgattggtccaccagactcccgacacaaatc--atcaaggcacccctcaactcacgaaccaccagagcag 4000135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 115
Target Start/End: Complemental strand, 23087680 - 23087591
Alignment:
Q  26 tgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaa 115  Q
    |||||||||| ||| ||| ||||||||||  ||||||| |||||||||||  | || |||||||||  ||||| | |||||| |||||||    
T  23087680 tgatcaattaggcatccgatagtgattttacttcaaacgttcagcttcgactatcactcaagttccgatctatcgaaggagacatcacaa 23087591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 26 - 191
Target Start/End: Original strand, 4397382 - 4397547
Alignment:
Q  26 tgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaa 125  Q
    |||||||||| ||||||| ||||||||||| ||||||| ||||||||||| ||||| ||||| ||| |||||| |||||||| |||||||||| ||||||    
T  4397382 tgatcaattaggcacccgatagtgattttgcttcaaacgttcagcttcgaccaccactcaagatccggtctatcggaggagacatcacaacagcctaaaa 4397481  T
Q  126 gtacctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgaca 191  Q
    | ||||||||||||||||||||||||| |||||| |||||||||||||  || |||||||||||||    
T  4397482 ggacctgagtcacaaacttactcccgaactcgaatcaaaagcgatcggcacataagactcccgaca 4397547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 38710127 - 38709918
Alignment:
Q  20 caacggtgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacaga 119  Q
    |||| ||||||||||  ||||||  | ||||||||| ||||| | ||||||||||| ||||| ||||||||| |||||| |||||||| |||||||||      
T  38710127 caacagtgatcaatttggcacccaatggtgattttgcttcaagcgttcagcttcgaccaccactcaagttccggtctatcggaggagacatcacaacatc 38710028  T
Q  120 ctaaaagtacctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactc 219  Q
    ||||||| ||||||||||||||||| |||||||||||||| ||||||||||| | ||| ||||||||||| | ||| |  |||||  |||| ||||||||    
T  38710027 ctaaaaggacctgagtcacaaacttgctcccgacctcgaatcaaaagcgatcagccca-aagactcccgaaacaaggc--aaaaaggcacccctcaactc 38709931  T
Q  220 acgaaccaccaga 232  Q
    |||||||||||||    
T  38709930 acgaaccaccaga 38709918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 4391732 - 4391572
Alignment:
Q  70 cttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagtacctgagtcacaaa-cttactcccgacctcgaagcaaaagcg 168  Q
    |||||| ||||| ||||||||| |||||| |||||||| |||||||||| ||||||| |||||||||||||| ||| ||||||||| |||| ||||||||    
T  4391732 cttcgaccaccactcaagttcctgtctatcggaggagacatcacaacagcctaaaag-acctgagtcacaaaacttgctcccgaccccgaatcaaaagcg 4391634  T
Q  169 atcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaaccaccaga 232  Q
    || || ||||||||||||||||| ||| |  |||||  |||| |||||||||||||||||||||    
T  4391633 attggcccacaagactcccgacacaaggc--aaaaatgcacccctcaactcacgaaccaccaga 4391572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 235
Target Start/End: Original strand, 39908881 - 39908940
Alignment:
Q  174 tccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaaccaccagagca 235  Q
    |||||||||||| ||||| ||||| ||||| ||| ||  |||||||||||||||||||||||    
T  39908881 tccacaagactcacgacacaagtcaaaaaagcacccc--tcaactcacgaaccaccagagca 39908940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 28 - 236
Target Start/End: Complemental strand, 35847265 - 35847058
Alignment:
Q  28 atcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagt 127  Q
    |||||||| ||||||| ||||||||||| ||||||| ||||||||||| ||||| |||||| || |||||| |||||||| |||||| ||| |||||||     
T  35847265 atcaattaggcacccgatagtgattttgcttcaaacgttcagcttcgaccaccactcaagtcccggtctatcggaggagacatcacagcagcctaaaagg 35847166  T
Q  128 acctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaacca 227  Q
    ||| ||||||||||| | |||||||||||||| ||||| ||||||| |||||| |||||||||| |||| |||||||  ||||  ||||||||| |||||    
T  35847165 acccgagtcacaaacgtgctcccgacctcgaatcaaaatcgatcggcccacaaaactcccgacacaagt-caaaaaaggcacccatcaactcacaaacca 35847067  T
Q  228 ccagagcag 236  Q
    |||||||||    
T  35847066 ccagagcag 35847058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 46 - 236
Target Start/End: Original strand, 42742268 - 42742455
Alignment:
Q  46 agtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagtacctgagtcacaaactta 145  Q
    |||||||||  ||||||| | || ||| || ||||| |||||||||||||||| |||||||| |||||||||| ||||||| || ||||||||||||||     
T  42742268 agtgattttccttcaaacgtacaactttgaccaccactcaagttccagtctatcggaggagacatcacaacagcctaaaaggacatgagtcacaaacttg 42742367  T
Q  146 ctcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaaccaccagagcag 236  Q
    |||||||||||||| ||||||||||| | ||||||||||||||||| |||||  |||||  |||| | |||| ||||||||||||||||||    
T  42742368 ctcccgacctcgaatcaaaagcgatc-gcccacaagactcccgacacaagtc--aaaaaggcaccccacaacccacgaaccaccagagcag 42742455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 101 - 231
Target Start/End: Complemental strand, 39368956 - 39368828
Alignment:
Q  101 gaggagaaatcacaacagactaaaagtacctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaa 200  Q
    ||||||| | |||||||  ||||||| |||||||||| |||||| |||||||||||||| |||||||| |||| ||||||||||||||||| |||||  |    
T  39368956 gaggagacaacacaacaacctaaaagaacctgagtcaaaaacttgctcccgacctcgaatcaaaagcggtcggcccacaagactcccgacacaagtc--a 39368859  T
Q  201 aaaacacaccgctcaactcacgaaccaccag 231  Q
    |||| ||||| ||||||||||||||||||||    
T  39368858 aaaagacacctctcaactcacgaaccaccag 39368828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 28 - 236
Target Start/End: Complemental strand, 2707228 - 2707022
Alignment:
Q  28 atcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagt 127  Q
    ||||||||||||||| ||| |||||||| ||||||| |||||||| || ||||| ||||||| |  ||| | |||||||| |   ||| || |||||||     
T  2707228 atcaattaagcacccagtaatgattttgcttcaaacgttcagctttgaccaccactcaagttacgatctttcggaggagacaatgcaaaagcctaaaagg 2707129  T
Q  128 acctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaacca 227  Q
    || |||||||||||||  |||||||||||||| |||||| ||||||| ||| |||||||||||| |||||  |  ||  |||| ||||||||||||||||    
T  2707128 acatgagtcacaaactagctcccgacctcgaatcaaaagtgatcggttcactagactcccgacacaagtc--attaaagcacccctcaactcacgaacca 2707031  T
Q  228 ccagagcag 236  Q
    || ||||||    
T  2707030 ccggagcag 2707022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 65 - 235
Target Start/End: Complemental strand, 3204413 - 3204246
Alignment:
Q  65 ttcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagtacctgagtcacaaacttactcccgacctcgaagcaaa 164  Q
    |||||||| || ||||| |||||||| ||| ||| |||||||| |||||||||| ||||||| | || |||||||||||| |||||||||||||| ||||    
T  3204413 ttcagctttgaccaccactcaagttctagtatatcggaggagacatcacaacagcctaaaagaatctaagtcacaaacttgctcccgacctcgaatcaaa 3204314  T
Q  165 agcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaaccaccagagca 235  Q
    | |||| ||||||||||||| | |||| ||||   |||||  |||| |||||||||||| |||||||||||    
T  3204313 aacgattggtccacaagact-ctgacacaagt--taaaaaggcacccctcaactcacgagccaccagagca 3204246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 20 - 150
Target Start/End: Complemental strand, 25362448 - 25362318
Alignment:
Q  20 caacggtgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacaga 119  Q
    |||| ||||||||||| ||||||| ||| ||||||| ||||||| ||||||||| ||||||| ||||||||| ||||||    ||||| ||||||||||     
T  25362448 caacagtgatcaattaggcacccgatagagattttgcttcaaacgttcagcttcaatcaccactcaagttccggtctatcaatggagacatcacaacagc 25362349  T
Q  120 ctaaaagtacctgagtcacaaacttactccc 150  Q
    ||||||| ||||||||||||||||| |||||    
T  25362348 ctaaaaggacctgagtcacaaacttgctccc 25362318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 29686004 - 29685830
Alignment:
Q  17 catcaacggtgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaac 116  Q
    ||||||| ||| ||||||||||||| | || ||| |||| ||||||| ||||||||| | |||||  ||| |||| |||||| ||||||||  ||||||     
T  29686004 catcaacagtggtcaattaagcacctgataatgactttgcttcaaacgttcagcttccaccaccacacaaattccggtctatcggaggagacttcacaaa 29685905  T
Q  117 agactaaaagtacctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgaca 191  Q
    || ||||||| | ||||||||||||||  |||||||| ||||| |||||| |||||  |||  ||||||||||||    
T  29685904 agcctaaaaggatctgagtcacaaactagctcccgacttcgaatcaaaagtgatcgacccattagactcccgaca 29685830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 45 - 146
Target Start/End: Complemental strand, 40377745 - 40377644
Alignment:
Q  45 tagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagtacctgagtcacaaactt 144  Q
    ||||||||||  ||||||| ||||| ||| | ||||| ||||| ||| |||||| |||||||| |||||||||| ||||||| |||||||||||||| ||    
T  40377745 tagtgattttacttcaaacgttcaggttccaccaccactcaagatccggtctatcggaggagacatcacaacagcctaaaaggacctgagtcacaaagtt 40377646  T
Q  145 ac 146  Q
    ||    
T  40377645 ac 40377644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 191
Target Start/End: Complemental strand, 25341834 - 25341702
Alignment:
Q  60 aaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagtacctgagtcacaaa-cttactcccgacctcga 158  Q
    |||| ||||||||| | |||||||||| |||| |||  | |||||||| ||||||| || ||||||| ||||| |||| ||| || |||| | | ||| |    
T  25341834 aaacgttcagcttctaccaccaatcaacttccggtcagtcggaggagacatcacaaaagcctaaaaggacctgtgtcaaaaatctaactctcaatctcaa 25341735  T
Q  159 agcaaaagcgatcggtccacaagactcccgaca 191  Q
    | |||||| |||||| |||| ||||||||||||    
T  25341734 atcaaaagtgatcggcccaccagactcccgaca 25341702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 17218890 - 17218822
Alignment:
Q  20 caacggtgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagt 88  Q
    |||| |||| |||||| ||||||  ||||||||||| ||||||  ||||||||||| ||||| ||||||    
T  17218890 caacagtgaacaattaggcacccaatagtgattttgcttcaaaagttcagcttcgaccaccactcaagt 17218822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 57 - 236
Target Start/End: Original strand, 4397373 - 4397550
Alignment:
Q  57 ttcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagtacctgagtcacaaacttactcccgacctc 156  Q
    ||||||| | ||||||||| ||||| ||||||||| |||| | |||||||| |||||||||  ||||||| ||||||||||||||||| |||||||||||    
T  4397373 ttcaaacgtacagcttcgaccaccactcaagttccggtctttcggaggagacatcacaacaacctaaaaggacctgagtcacaaacttgctcccgacctc 4397472  T
Q  157 gaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaaccaccagagcag 236  Q
    ||| ||||||||||| | ||||||||||||||| | |||||  ||||   |||| ||||||||||||||||||| |||||    
T  4397473 gaatcaaaagcgatcagcccacaagactcccgagagaagtc--aaaatggcacccctcaactcacgaaccaccatagcag 4397550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 37128835 - 37129043
Alignment:
Q  26 tgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaa 125  Q
    |||| ||||| ||||||| |||||||||||  |||||  ||||||||||| ||||| ||||||| | |||||| |||||||| |||||||||  || |||    
T  37128835 tgatgaattaggcacccgatagtgattttgcatcaaatgttcagcttcgaccaccattcaagtttcggtctatcggaggagacatcacaacatcctgaaa 37128934  T
Q  126 gtacctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaac 225  Q
    | || ||||||||||||||  ||| ||||||||| ||||||||||||| ||||||||||||  ||| |||||  |||||  ||||  |||||||||||||    
T  37128935 ggacttgagtcacaaacttgttccggacctcgaatcaaaagcgatcggcccacaagactcctaacacaagtc--aaaaaggcacctatcaactcacgaac 37129032  T
Q  226 caccagagcag 236  Q
    |||||||||||    
T  37129033 caccagagcag 37129043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 41958407 - 41958194
Alignment:
Q  20 caacggtgatcaattaagcacccggtagtgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacaga 119  Q
    |||| ||||| ||||| || |||| ||||||||||| ||||||  ||||||||||| ||||| ||||||| | ||||||  |||||||  | ||||||||    
T  41958407 caacagtgatgaattaggcgcccgatagtgattttgtttcaaatgttcagcttcgaccaccactcaagtttcggtctatcagaggagacgttacaacaga 41958308  T
Q  120 ctaaaagtacctgagtcacaaacttactcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactc 219  Q
    ||||||| ||||||||||||||||| || ||||||||||| |||||| | |||| |||||||||||| |||| |||||  |||||  ||||  |||||||    
T  41958307 ctaaaaggacctgagtcacaaacttgcttccgacctcgaatcaaaagtggtcgg-ccacaagactcctgacacaagtc--aaaaaggcacccttcaactc 41958211  T
Q  220 acgaaccaccagagcag 236  Q
    || ||||||||||||||    
T  41958210 acaaaccaccagagcag 41958194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 4e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 48 - 191
Target Start/End: Complemental strand, 6003521 - 6003378
Alignment:
Q  48 tgattttgattcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagtacctgagtcacaaacttact 147  Q
    |||| ||| ||||||| ||||||||||| ||||| ||||||| |||||||| ||||| || |||||||||| ||||||| ||||||| |||||| || ||    
T  6003521 tgatgttgcttcaaacgttcagcttcgaccaccactcaagtttcagtctatcggaggcgacatcacaacagcctaaaaggacctgagacacaaatttgct 6003422  T
Q  148 cccgacctcgaagcaaaagcgatcggtccacaagactcccgaca 191  Q
     ||||||||||| ||||||||||||| ||| |||||||| ||||    
T  6003421 tccgacctcgaatcaaaagcgatcggcccataagactcctgaca 6003378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 235
Target Start/End: Original strand, 27993568 - 27993655
Alignment:
Q  146 ctcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaaccaccagagca 235  Q
    ||||||| |||||| |||||| ||||||||||| |||||||||||| || ||  | ||| ||||| ||||||||||||||||||||||||    
T  27993568 ctcccgatctcgaatcaaaagtgatcggtccaccagactcccgacacaaatc--ataaagacacccctcaactcacgaaccaccagagca 27993655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 57 - 191
Target Start/End: Complemental strand, 25153360 - 25153224
Alignment:
Q  57 ttcaaacattcagcttcgatcaccaatcaagttccagtctattggaggagaaatcacaacagactaaaagtacctgagt--cacaaacttactcccgacc 154  Q
    ||||||||||||| ||||| ||||| |||| |||| ||||||||||||||| | || || || ||||||| |||| |||   | |||||  ||  ||| |    
T  25153360 ttcaaacattcagattcgaccaccagtcaacttccggtctattggaggagacaccaaaatagtctaaaagaacctaagtaagaaaaactggctttcgatc 25153261  T
Q  155 tcgaagcaaaagcgatcggtccacaagactcccgaca 191  Q
    ||||| |||||| ||||||||||| ||||||||||||    
T  25153260 tcgaatcaaaagtgatcggtccaccagactcccgaca 25153224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 147 - 235
Target Start/End: Complemental strand, 2570208 - 2570122
Alignment:
Q  147 tcccgacctcgaagcaaaagcgatcggtccacaagactcccgacataagtccaaaaaacacaccgctcaactcacgaaccaccagagca 235  Q
    ||||||||||||| ||||||||||  | |||| ||||||| |||| |||||  |||||  |||| |||||||||||| | |||||||||    
T  2570208 tcccgacctcgaatcaaaagcgataagcccaccagactcctgacacaagtc--aaaaaggcacccctcaactcacgagcaaccagagca 2570122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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