View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2845_high_1 (Length: 712)
Name: NF2845_high_1
Description: NF2845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2845_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 615; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 615; E-Value: 0
Query Start/End: Original strand, 19 - 708
Target Start/End: Complemental strand, 25255322 - 25254632
Alignment:
| Q |
19 |
atttacaggtaaatatgagcattgctatacttccaatgtcagcagagtacaactggaaccccaccactgtaggtttagtacagtcttctttcttttgggg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25255322 |
atttacaggtaaatatgagcattgctatacttccaatgtcagcagagtacaactggaaccccaccactgtaggtttagtacagtcttctttcttttgggg |
25255223 |
T |
|
| Q |
119 |
atacctcctcactcaggtacgtggtttcattttgattagtaactctttgtctcttctcttaattttgaactacaagccatagctctgatgcatccgtaga |
218 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25255222 |
atacctcctcactcaggtacgtggtttcattttaattagtaactttttgtctcttctcttaattttgaactacaagccatagctctgatgcatctgtaga |
25255123 |
T |
|
| Q |
219 |
tacttgttgcagattgctggtggaatatgggctgacacagtgggagggaagcaagttttagcatttggcgtcatttggtggtccgttgccacaatcctaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25255122 |
tacttgttgcagattgctggtggaatatgggctgacacggtgggagggaagcaagttttagcatttggcgtcatttggtggtccgttgccacaatcctaa |
25255023 |
T |
|
| Q |
319 |
ctcccgtagctgccaaacttggattgccttttctattagttgcccgtgcattcatgggaattggtgaggtgcgttctgttaaaatgttctttgttgcacc |
418 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
25255022 |
ctcccgtagctgccaaacttggactgccttttctattagttgcccgtgcattcatgggaattggtgaggtgtgttctgttaaaatgttctttgttgcacc |
25254923 |
T |
|
| Q |
419 |
cgatattgtcagtgatattagtaatgatttgattcagatggttggtgatgatacaatatgatggtag-tttcttgtccatgtgaagctaacttcttttgg |
517 |
Q |
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| T |
25254922 |
ctatgctgtcactgatattagtaatgatttgattcatatagttggtgatgatacgatatgatggtagcttttttttccatgtgaagctaacttcttttgg |
25254823 |
T |
|
| Q |
518 |
atcttactagggtgttgctatgccggccatgaataatattctgtcaaaatgggttcctgtagcagagagaagtagatcattagctctggtatacagtggc |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
25254822 |
atcttactagggtgttgctatgccggccatgaataatattctgtcaaaatgggttcctgtggcagagagaagtagatcattagctctggtatacagtggc |
25254723 |
T |
|
| Q |
618 |
atgtaccttggatcggtcactggattggccttttcacctttcctaattcatcagtatggatggccatcggtgttttactcctttgcttctc |
708 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25254722 |
atgtaccttggatcggtcactggattggccttttcacctttcctaattcatcagtatggatggccatcggtgttttactcctttggttctc |
25254632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 526 - 702
Target Start/End: Complemental strand, 11319913 - 11319737
Alignment:
| Q |
526 |
agggtgttgctatgccggccatgaataatattctgtcaaaatgggttcctgtagcagagagaagtagatcattagctctggtatacagtggcatgtacct |
625 |
Q |
| |
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|||||||||||||||| || |||||||||||||| || || ||| |||| ||| | |||||||| |||||| | || || ||||| |||||||||||||| |
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| T |
11319913 |
agggtgttgctatgcctgcaatgaataatattctttccaagtggattccagtatcggagagaagcagatcacttgcactagtatatagtggcatgtacct |
11319814 |
T |
|
| Q |
626 |
tggatcggtcactggattggccttttcacctttcctaattcatcagtatggatggccatcggtgttttactcctttg |
702 |
Q |
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||| || ||||| || |||| || || ||||||||||| || | | |||||||||||| ||||| ||||| |||| |
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| T |
11319813 |
tggttctgtcacaggcttgggattctcgcctttcctaatccaaaaatttggatggccatctgtgttctactcatttg |
11319737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 526 - 628
Target Start/End: Original strand, 29401838 - 29401940
Alignment:
| Q |
526 |
agggtgttgctatgccggccatgaataatattctgtcaaaatgggttcctgtagcagagagaagtagatcattagctctggtatacagtggcatgtacct |
625 |
Q |
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||||||| || ||||| |||||||||||||| ||||| || ||| |||| || | |||||||| |||||| | | || ||||| |||||||||||||| |
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| T |
29401838 |
agggtgtagccatgcccgccatgaataatatactgtccaagtggattccagtttcggagagaagcagatcactttcactagtatatagtggcatgtacct |
29401937 |
T |
|
| Q |
626 |
tgg |
628 |
Q |
| |
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||| |
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|
| T |
29401938 |
tgg |
29401940 |
T |
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