View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2845_high_3 (Length: 436)
Name: NF2845_high_3
Description: NF2845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2845_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 188 - 432
Target Start/End: Original strand, 25217337 - 25217581
Alignment:
| Q |
188 |
ctattttcttgatttttggatgtgtctggtaatgtttaaatgacttgcttgttggtgttcatgtatggtttctaatatgaatttgtgggaaacgaataca |
287 |
Q |
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| T |
25217337 |
ctattttcttgatttttggatgtgtctagtaatgtttaaatgacttgcttgttggtgttcatgtatggtttctaatatgaatttgtgggaaacgaataca |
25217436 |
T |
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| Q |
288 |
atttcatactcttaatggtgttattttttcagttgatgggttttgcagaaaattctggctggatgatactatctagtgaactctgaggtgcagtagtttt |
387 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25217437 |
atttcatactcttaatggtgttattttttcagttgatgggttttgcagaaaaatctggctggatgatactatctagtgaacgctgaggtgcagtagtttt |
25217536 |
T |
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| Q |
388 |
cacaggagattaatacgaagaatttttcgaagagaattatttacc |
432 |
Q |
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| T |
25217537 |
cacaggagattaatacgaagaatttttccaagagaaatatttacc |
25217581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 188 - 432
Target Start/End: Original strand, 25281492 - 25281736
Alignment:
| Q |
188 |
ctattttcttgatttttggatgtgtctggtaatgtttaaatgacttgcttgttggtgttcatgtatggtttctaatatgaatttgtgggaaacgaataca |
287 |
Q |
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| T |
25281492 |
ctattttcttgatttttggatgtgtctagtaatgtttaaatgacttgcttgttggtgttcatgtatggtttctaatatgaatttgtgggaaacgaataca |
25281591 |
T |
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| Q |
288 |
atttcatactcttaatggtgttattttttcagttgatgggttttgcagaaaattctggctggatgatactatctagtgaactctgaggtgcagtagtttt |
387 |
Q |
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| T |
25281592 |
atttcatactcttaatggtgttattttttcagttgatgggttttgcagaaaaatctggctggatgatactatctagtgaacgctgaggtgcagtagtttt |
25281691 |
T |
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| Q |
388 |
cacaggagattaatacgaagaatttttcgaagagaattatttacc |
432 |
Q |
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| T |
25281692 |
cacaggagattaatacgaagaatttttccaagagaaatatttacc |
25281736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 144 - 301
Target Start/End: Original strand, 25103756 - 25103918
Alignment:
| Q |
144 |
attccctctaaaattttaaacatgttgacataagaattgacttcctattttcttg-atttttgg----atgtgtctggtaatgtttaaatgacttgcttg |
238 |
Q |
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|||| ||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||||| |||| || ||| ||| ||||||||||||||| |
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| T |
25103756 |
attcgctctaaaattttaaagatgttgacataaggattgactttctattttcttgaatttttggatatatgtatcgtgtattgtctaaatgacttgcttg |
25103855 |
T |
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| Q |
239 |
ttggtgttcatgtatggtttctaatatgaatttgtgggaaacgaatacaatttcatactctta |
301 |
Q |
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| | |||||||||||||| ||||||||||||||| ||| ||||| || |||||||||||| |
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| T |
25103856 |
tcagatttcatgtatggtttgtaatatgaatttgtgtgaagtgaatataaattcatactctta |
25103918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 144 - 301
Target Start/End: Original strand, 25162849 - 25163011
Alignment:
| Q |
144 |
attccctctaaaattttaaacatgttgacataagaattgacttcctattttcttg-atttttgg----atgtgtctggtaatgtttaaatgacttgcttg |
238 |
Q |
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|||| ||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||||| |||| || ||| ||| ||||||||||||||| |
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| T |
25162849 |
attcgctctaaaattttaaagatgttgacataaggattgactttctattttcttgaatttttggatatatgtatcgtgtattgtctaaatgacttgcttg |
25162948 |
T |
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| Q |
239 |
ttggtgttcatgtatggtttctaatatgaatttgtgggaaacgaatacaatttcatactctta |
301 |
Q |
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| | |||||||||||||| ||||||||||||||| ||| ||||| || |||||||||||| |
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| T |
25162949 |
tcagatttcatgtatggtttgtaatatgaatttgtgtgaagtgaatataaattcatactctta |
25163011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 25071264 - 25071331
Alignment:
| Q |
321 |
tgatgggttttgcagaaaattctggctggatgatactatctagtgaactctgaggtgcagtagttttc |
388 |
Q |
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| T |
25071264 |
tgatgggttttgcagaaaattctggctggagggtactatccagtgaactatgaggtgcagtatttttc |
25071331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 321 - 388
Target Start/End: Original strand, 25129239 - 25129306
Alignment:
| Q |
321 |
tgatgggttttgcagaaaattctggctggatgatactatctagtgaactctgaggtgcagtagttttc |
388 |
Q |
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|||||||||||||||||||||||||||||| | ||||||| |||||||| |||||||||||| ||||| |
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| T |
25129239 |
tgatgggttttgcagaaaattctggctggagggtactatccagtgaactatgaggtgcagtatttttc |
25129306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 25071183 - 25071225
Alignment:
| Q |
281 |
gaatacaatttcatactcttaatggtgttattttttcagttga |
323 |
Q |
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| T |
25071183 |
gaatacaatttcatactcttaatggtgttattttttcagttga |
25071225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 281 - 323
Target Start/End: Original strand, 25129158 - 25129200
Alignment:
| Q |
281 |
gaatacaatttcatactcttaatggtgttattttttcagttga |
323 |
Q |
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| T |
25129158 |
gaatacaatttcatactcttaatggtgttattttttcagttga |
25129200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 7023687 - 7023744
Alignment:
| Q |
145 |
ttccctctaaaattttaaacatgttgacataagaattgacttcctattttcttgattt |
202 |
Q |
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||||||||||| |||| || || ||||||||||||||||||||||||||| ||||||| |
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| T |
7023687 |
ttccctctaaattttttaagattttgacataagaattgacttcctattttattgattt |
7023744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 25070577 - 25070631
Alignment:
| Q |
148 |
cctctaaaattttaaacatgttgacataagaattgacttcctattttcttgattt |
202 |
Q |
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|||||||||||||||| ||| |||| |||| |||||||| ||||||||||||||| |
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| T |
25070577 |
cctctaaaattttaaagatgctgacctaaggattgactttctattttcttgattt |
25070631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 148 - 202
Target Start/End: Original strand, 25128552 - 25128606
Alignment:
| Q |
148 |
cctctaaaattttaaacatgttgacataagaattgacttcctattttcttgattt |
202 |
Q |
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|||||||||||||||| ||| |||| |||| |||||||| ||||||||||||||| |
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| T |
25128552 |
cctctaaaattttaaagatgctgacctaaggattgactttctattttcttgattt |
25128606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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