View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2845_high_5 (Length: 291)
Name: NF2845_high_5
Description: NF2845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2845_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 5668827 - 5669085
Alignment:
| Q |
16 |
acacattttccaattaatatgcaatagtttaatgaacactaactttgcactttgtgataaacgtgtcatatattttctaaatactaaaagtatgcaaatg |
115 |
Q |
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| T |
5668827 |
acacattttccaattaatatgcaatagtttaatgaacactaactttgcactttgtgataaacgtgtcatatattttctaaagactaaaagtatgcaaatg |
5668926 |
T |
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| Q |
116 |
ataaggaactttaaatattgatggatgtgtatatatccataattaaataaataaatagggttcaaa-cccggccactac-nnnnnnnnnntattagaaaa |
213 |
Q |
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| T |
5668927 |
ataaggaactttaaatattgatggatgtgtatatatctataaataaataagtaaatagggttcaaaccccggccactacaaaaaaaaaattattagaaaa |
5669026 |
T |
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| Q |
214 |
agaaatatattattcttatttgtgttgcactaagtctggtttttaccaggttccatact |
272 |
Q |
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| T |
5669027 |
agaaatatattattcttatttgtgttgcactaagtatggtttttaccaggttccatact |
5669085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 5721368 - 5721408
Alignment:
| Q |
36 |
gcaatagtttaatgaacactaactttgcactttgtgataaa |
76 |
Q |
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| T |
5721368 |
gcaatagtttaatgaacactaactttgaacttggtgataaa |
5721408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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