View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2845_high_6 (Length: 290)
Name: NF2845_high_6
Description: NF2845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2845_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 6683022 - 6682881
Alignment:
| Q |
20 |
tcaagtcattgagcattt-gtagtatgagggtattggaatatatatgggtttctccaactgcagcaacattcttcccaactttagagagacttagtatat |
118 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6683022 |
tcaagtcattgagcattttgtagtttgaggatattggaatatatatgggtttctccaactgcagcaacattcttcccaactttagagagacttagtatat |
6682923 |
T |
|
| Q |
119 |
cttcttgtgataaacttcggggatggaagtcgaaagaagatg |
160 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6682922 |
cttcttgtgacaaacttcggggatggaagtcgaaagaagatg |
6682881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 159 - 277
Target Start/End: Complemental strand, 6682763 - 6682645
Alignment:
| Q |
159 |
tgtgtgaatctacactgaaaccattgaaagacgctctggacacatccaccactcctctttcaatgctaaagtcacttaagatacaaggcaacaatttaga |
258 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6682763 |
tgtgtgaatctacactgaaaccattgaaagacgctctggacacatccaccactcctctttccatgctaaagtcacttaagatacaaggcagcaatttaga |
6682664 |
T |
|
| Q |
259 |
aatcgattctttgccatct |
277 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
6682663 |
aatcgattctttgccatct |
6682645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University