View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2845_high_9 (Length: 239)
Name: NF2845_high_9
Description: NF2845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2845_high_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 222
Target Start/End: Original strand, 1543767 - 1543978
Alignment:
| Q |
11 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctccaaacaatgcttaccctcccaacaatggtggcggataccctttcaacaaccaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1543767 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctccaaacaatgcttaccctcccaacaatggtggcggataccctttcaacaaccaa |
1543866 |
T |
|
| Q |
111 |
gctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcaggtggcggataccctccccacgacatgagtggacctcctcctcctcccaaca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
1543867 |
gctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcaggtggtggataccctccccacaacatgagtggacctcctcctcctcccaaca |
1543966 |
T |
|
| Q |
211 |
gtggatatcgtg |
222 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1543967 |
gtggatatcgtg |
1543978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 114 - 203
Target Start/End: Original strand, 32421641 - 32421730
Alignment:
| Q |
114 |
ggatatgcccctccaaatcaaggtggatacgctcctccaaatgcaggtggcggataccctccccacgacatgagtggacctcctcctcct |
203 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| | ||||||| ||||| ||||||||| |
|
|
| T |
32421641 |
ggatacgcccctccaaatcaaggtggatatgctcctccaaatgcaggtggtggataccctccccccaacatgagcggaccccctcctcct |
32421730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 11 - 65
Target Start/End: Original strand, 32421436 - 32421490
Alignment:
| Q |
11 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctccaaacaat |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32421436 |
cagagacatgcagagtaggcctccagtgcagaattctggtccacctcccaacaat |
32421490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 32421524 - 32421610
Alignment:
| Q |
69 |
taccctcccaacaatggtggcggataccctttcaacaaccaagctggatatgcccctccaaatcaaggtggatacgctcctccaaat |
155 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||| | ||||||||| |
|
|
| T |
32421524 |
taccctcccaacaatgctggcggataccctcctaacaatcaagctggatactcccctccaaatcaatctggatactcccctccaaat |
32421610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 155
Target Start/End: Original strand, 32421611 - 32421658
Alignment:
| Q |
108 |
caagctggatatgcccctccaaatcaaggtggatacgctcctccaaat |
155 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
32421611 |
caagctggatacgcccctccaaatcaaggcggatacgcccctccaaat |
32421658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 32425686 - 32425738
Alignment:
| Q |
108 |
caagctggatatgcccctccaaatcaaggtggatacgctcctccaaatgcagg |
160 |
Q |
| |
|
||||||||| | ||| || |||||||||| ||||||||| ||||||||||||| |
|
|
| T |
32425686 |
caagctggacacgcctctgcaaatcaaggcggatacgcttctccaaatgcagg |
32425738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University