View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2845_low_1 (Length: 1929)
Name: NF2845_low_1
Description: NF2845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2845_low_1 |
 | |
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| [»] scaffold0028 (3 HSPs) |
| | |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: scaffold0028 (Bit Score: 656; Significance: 0; HSPs: 3)
Name: scaffold0028
Description:
Target: scaffold0028; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 18 - 767
Target Start/End: Original strand, 124628 - 125376
Alignment:
| Q |
18 |
ataaggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttgtcgatgctatcaatag |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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|
| T |
124628 |
ataaggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttatcgatgctatcgatag |
124727 |
T |
|
| Q |
118 |
ttgttgcagcattaaacaccagcctaaacttatgattagttgctttgatggtcatctcatttttctcaacatcaaagttttgcagagtaaaagtagtgtt |
217 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
124728 |
ttgttgcaacattaaacaccagcctaaacttatgattagttgctttgatggtcatctcatttttctcaacatcaaagttttgcagagtaaaagtagtgtt |
124827 |
T |
|
| Q |
218 |
ctcagcaactctactcttaaactgatctttgaattcatttggcaaaatgacttgaatacgatcaccctgaaaaatgtgacaacatattattcttatggca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
124828 |
ctcagcaactctactcttaaactgatctttgaattcatttggcaaaatgacttgaatacgatcaccctgaaaaatgtgacaacatattattcttatggca |
124927 |
T |
|
| Q |
318 |
attagaagcaaacaaaaaatacttgttataacaacaatatattataaaccaacaacatagtttggtgaactaaaaatcacctctttgtcgcacaccacca |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
124928 |
attagaagcaaacaaaaaatacttgttataacaacaatatattataaaccaacaacatagtttggtgaactaaaaatcacctctttgtcgcaccccacca |
125027 |
T |
|
| Q |
418 |
tctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagattttgaatcattgaggctgttaat |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
125028 |
tctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagattttgaatcattgaggctgttaat |
125127 |
T |
|
| Q |
518 |
tttttggaaaggcctagccattgttgctgtaaaaaacatgttgacaatgacattttacaatgatttcacattcactttacaaaacatttnnnnnnntgca |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
125128 |
tttttggaaaggcctagccattgttgctgtaaaaaacatgttgacaatgacattttacaatgatttcacattcactttacaaaatatttaaaaaaatgca |
125227 |
T |
|
| Q |
618 |
catgcatttcagacaataatttaagttgacatgttgaacaaagttgatataaagtaaacgtttnnnnnnnnnnnntggaaccttaacaaacgaaataaaa |
717 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
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|
| T |
125228 |
catgcatttcaaacaataatttaagttgacatgttgaacaaagttgatataaagtaaacgttt-taaaaaaaaaatggaacattaacaaacgaaataaaa |
125326 |
T |
|
| Q |
718 |
atatgggttttcttttacaatatatactaatattcacagatctatttcct |
767 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
125327 |
atatgggttttcttttacaatatatactaatattctcagatctatttcct |
125376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #2
Raw Score: 286; E-Value: 1e-159
Query Start/End: Original strand, 1155 - 1464
Target Start/End: Original strand, 125764 - 126073
Alignment:
| Q |
1155 |
actgagtttgcaaggagaagatttgaaaagagagtttctctttctcagcaagtgtaagtacaactcaagtgacatatgctttattcaaaacaccttttca |
1254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
125764 |
actgagtttgcaaggagaagatttgaaaagagagtttctctttctcagcaagtgtaagtacaactgaagtgacatatgctttattcaaaacaccttttca |
125863 |
T |
|
| Q |
1255 |
aaatcttttgttggatttccctgctttccctcccttacggaagttgaagccttttctcctttggaaccctctctttaactcaaatgctcacgtgtcactt |
1354 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
125864 |
aaatcttttgttggatttccatgctttccctcccttacggaagttgaagccttttctcctttggaaccctctctttaactcaaatgctcacgtgtcactt |
125963 |
T |
|
| Q |
1355 |
aatggagctgtccacttgtcaaacaaagccgcagccaattgtcacacatacaggaagccagatgtcatgcctgaaggaagcaggtattctcttcttatat |
1454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
125964 |
aatggagctgtccacttgtcaaacaaagccgcagccaattgtcacacatataggaaaccaaatgtcatgcctggaggaagcaggtattctcttcttatat |
126063 |
T |
|
| Q |
1455 |
tataggagat |
1464 |
Q |
| |
|
|||||||||| |
|
|
| T |
126064 |
tataggagat |
126073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0028; HSP #3
Raw Score: 75; E-Value: 1e-33
Query Start/End: Original strand, 957 - 1035
Target Start/End: Original strand, 125566 - 125644
Alignment:
| Q |
957 |
gaatattcagtataaacgttttgaaattattaccaggaagatgaacagttgagtatcacctgcaaaataacaacaaagg |
1035 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
125566 |
gaatattcaatataaacgttttgaaattattaccaggaagatgaacagttgagtatcacctgcaaaataacaacaaagg |
125644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 1e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 1e-79
Query Start/End: Original strand, 18 - 546
Target Start/End: Original strand, 23699800 - 23700320
Alignment:
| Q |
18 |
ataaggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttgtcgatgctatcaatag |
117 |
Q |
| |
|
||||||||||| ||||||| || |||||||| ||| |||||| |||||||| | ||||| |||| | ||||||||||||||||| || | |
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|
| T |
23699800 |
ataaggacatctggccttactattcccttcttgatctcatcaaactccttgaaactgaatgatggtctaggtatgtcatgtttgtc---------aacac |
23699890 |
T |
|
| Q |
118 |
ttgttgcagcattaaacaccagcctaaacttatgattagttgctttgatggtcatctcatttttctcaacatcaaagttttgcagagtaaaagtagtgtt |
217 |
Q |
| |
|
||||| || ||||||||||| |||||| | ||||| |||| ||||||||||||| ||||||||||| || ||||||| ||||||||| ||||||| ||| |
|
|
| T |
23699891 |
ttgttccaccattaaacacctacctaaattgatgatcagttactttgatggtcatatcatttttctctacctcaaagtcttgcagagtgaaagtagcgtt |
23699990 |
T |
|
| Q |
218 |
ctcagcaactctactcttaaactgatctttgaattcatttggcaaaatgacttgaatacgatcaccctgaaaaatgtg--acaacatattattcttatgg |
315 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||| |||||||||| |||||||| ||||||||||| |||||| | ||| ||| |||| || | |
|
|
| T |
23699991 |
ctcagcaattctactcttaaacttatctttgaattcagttggcaaaattacttgaattcgatcaccctg-aaaatgagacacattataatattgagatag |
23700089 |
T |
|
| Q |
316 |
caattagaagcaaacaaaaaatacttgttataacaacaatatattataaaccaacaacatagtttggtgaactaaaaatcacctctttgtcgcacaccac |
415 |
Q |
| |
|
| | ||||| || | ||| |||||||| || || | ||| |||||||||||||| ||||| || | | |||| ||||||||||| |||| ||| |
|
|
| T |
23700090 |
aattaagaagtaagatacaaaaacttgttagaataatagtatgttataaaccaacaatatagtagcgttatgtcaaaactacctctttgtcacacaacac |
23700189 |
T |
|
| Q |
416 |
catctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagattttgaatcattgaggctgtta |
515 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||||||| |||||| ||| |||||||| | || |
|
|
| T |
23700190 |
catctcaatatgttgtttgctctttgaattagtaacagtccacaaatcaacaactcgaacatcaattttccacagagatttggaaccattgaggttcttg |
23700289 |
T |
|
| Q |
516 |
attttttggaaaggcctagccattgttgctg |
546 |
Q |
| |
|
||||||| |||||||||||||||||||||| |
|
|
| T |
23700290 |
attttttccaaaggcctagccattgttgctg |
23700320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 147; Significance: 1e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 147; E-Value: 1e-76
Query Start/End: Original strand, 1783 - 1929
Target Start/End: Original strand, 33649347 - 33649493
Alignment:
| Q |
1783 |
gaagatgctctattttgtttatatcatgttctctaacaaaacaaacaaaaatatcttctaatgttctcttcattctatatatcttcttaaagccaaacaa |
1882 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33649347 |
gaagatgctctattttgtttatatcatgttctctaacaaaacaaacaaaaatatcttctaatgttctcttcattctatatatcttcttaaagccaaacaa |
33649446 |
T |
|
| Q |
1883 |
accactgaagtgcaaatgttttatagttcatagtttatactcaatta |
1929 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33649447 |
accactgaagtgcaaatgttttatagttcatagtttatactcaatta |
33649493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 6e-63
Query Start/End: Original strand, 1588 - 1715
Target Start/End: Original strand, 33649152 - 33649279
Alignment:
| Q |
1588 |
ctctgtttcaaaatcacattaatcaacactcatcaatgttcaaactttaaaattcagaatccaaaaataattgaaaactcaaattattttttaaagactc |
1687 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33649152 |
ctctgtttcaaaatcacattaattaacactcatcaatgttcaaactttaaaattcagaatccaaaaataattgaaaactcaaattattttttaaagactc |
33649251 |
T |
|
| Q |
1688 |
gatcatcatctcttctcctttcaaagac |
1715 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
33649252 |
gatcatcatctcttctcctttcaaagac |
33649279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 1463 - 1518
Target Start/End: Original strand, 33649027 - 33649082
Alignment:
| Q |
1463 |
atttaaaattgctaacggtggcccaaaaacacatgttaattaattaaatagatgaa |
1518 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33649027 |
atttaaaattgctaacggtggcccaaaaacacatgttaattaattaaatagatgaa |
33649082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-45; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-45
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 22079497 - 22079763
Alignment:
| Q |
21 |
aggacatcgggccttagtacgcccttctttatcatatcaaattccttgaagcagaatggtggtttgggtatgtcatgtttgtcgatgctatcaatagttg |
120 |
Q |
| |
|
|||||||| ||||||||| | |||||||| ||| |||||| ||||| ||| ||| | ||||||||| |||||||| ||||| ||| | |||| | ||| |
|
|
| T |
22079497 |
aggacatctggccttagtgctcccttcttgatctcatcaaagtccttaaagttgaaagatggtttgggaatgtcatgcttgtcaatgttgtcaacacttg |
22079596 |
T |
|
| Q |
121 |
ttgcagcattaaacaccagcctaaacttatgattagttgctttgatggtcatctcatttttctcaacatcaaagttttgcagagtaaaagtagtgttctc |
220 |
Q |
| |
|
|| || |||||||||||| || ||| ||||| ||||||||| || |||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |
|
|
| T |
22079597 |
ttccaccattaaacaccaaccaaaatggatgatcagttgcttttatactcatttcatttttctcgacatcaaagttttgcagagtaaaggtagtgttctc |
22079696 |
T |
|
| Q |
221 |
agcaactctactcttaaactgatctttgaattcatttggcaaaatgacttgaatacgatcaccctga |
287 |
Q |
| |
|
| ||| ||||| ||||||||||||||||| |||| ||||| ||| | ||||||||||||| ||||| |
|
|
| T |
22079697 |
aacaattctacccttaaactgatctttgagttcaaatggcagaattatttgaatacgatcaacctga |
22079763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-43
Query Start/End: Original strand, 395 - 553
Target Start/End: Original strand, 22079870 - 22080028
Alignment:
| Q |
395 |
cacctctttgtcgcacaccaccatctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagat |
494 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||| |||| |
|
|
| T |
22079870 |
cacctctttgtcacacaacaccatctcaatatgttgtttgttctttgaatttgcaacagtccacatgtcaacaactcgaacagcaattttccacagagat |
22079969 |
T |
|
| Q |
495 |
tttgaatcattgaggctgttaattttttggaaaggcctagccattgttgctgtaaaaaa |
553 |
Q |
| |
|
|| ||||||||| | | || || ||||| |||||||| ||||||||||||| |||||| |
|
|
| T |
22079970 |
ttgaaatcattgatgttcttgatcttttgcaaaggcctggccattgttgctggaaaaaa |
22080028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 4e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-30
Query Start/End: Original strand, 395 - 542
Target Start/End: Complemental strand, 1522683 - 1522538
Alignment:
| Q |
395 |
cacctctttgtcgcacaccaccatctcaatatgttgtttgttctttgaatttccaacagtccataaatcaacaactcgaacagcaattttccacaaagat |
494 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| ||||| |||||||||||| |||||||||| | ||||||||||||||| |||||||| || ||| |
|
|
| T |
1522683 |
cacctctttgtcacacaacaccatctcaatatgctgtttcttctttgaatttgcaacagtccacatgtcaacaactcgaacaacaattttc--cagggat |
1522586 |
T |
|
| Q |
495 |
tttgaatcattgaggctgttaattttttggaaaggcctagccattgtt |
542 |
Q |
| |
|
|| |||||||||||| | || || ||||| |||||||||||||||||| |
|
|
| T |
1522585 |
ttggaatcattgaggttcttgatcttttgcaaaggcctagccattgtt |
1522538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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