View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2845_low_3 (Length: 496)
Name: NF2845_low_3
Description: NF2845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2845_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 486
Target Start/End: Complemental strand, 16387807 - 16387321
Alignment:
| Q |
1 |
catcacgccttctctttttctgcttgcagcag---atgcagagaaggccaaacaccataagaatcaccactgccccgacggcgataccaacgatagctcc |
97 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
16387807 |
catcacgccttctctttttcttcttgcagcagcagatgcagagaaggagcaacaccataagaatcaccactgccccgatggcgataccaacgatagctcc |
16387708 |
T |
|
| Q |
98 |
ggttgaaatacttggcagtggtgaagggctttctttagagcttggtggggtctgggaaggtagagttgttgcaggtggtagatcccccggagttataatt |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16387707 |
ggttgaaatacttggcagtggtgaagggctttctttagagcttggtggggtctgggaaggtagagttgttgcaggtggtagatcccccggagttataatt |
16387608 |
T |
|
| Q |
198 |
aacggcaccgttgaggtggcgtttattgtcgggccagtcgacattgcagaaaattatatttnnnnnnnnttaatttagatgaaaaatgttaacgggggtt |
297 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16387607 |
aatggcaccgttgaggtggcgtttattgtcgggccagtcgacattgcagaaaattatatttaaaaaaaattaatttagatgaaaaatgttaacgggggtt |
16387508 |
T |
|
| Q |
298 |
gatgaaaatgaagattaaagataacccaattgaagaatttgaagtgggtatgtgagattttgttgtaaatgtgtttctctcttgaaaaaagattgaaact |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16387507 |
gatgaaaatgaagattaaagataacccaattgaagaatttgaagtgggtatgtgagattttgttgtaaatgtgtttctctcttgaaaaaagattgaaact |
16387408 |
T |
|
| Q |
398 |
tcannnnnnnnnnnnnntttgaagagtttaaggtgtggaatgtgtgtcttaaaaatatgtttttgctgtgcgttattcttccttctgtg |
486 |
Q |
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| T |
16387407 |
tcaagagagagagagagtttgaagagtttaaggtgtggaa--tgtgtcttaaaaatatgtttttgctgtgcgttattcttccttctgtg |
16387321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 32900856 - 32900782
Alignment:
| Q |
306 |
tgaagattaaagataacccaattgaagaatttgaagtgggtatgtgaga-ttttgttgtaaatgtgtttctctct |
379 |
Q |
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||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||| ||| |||||| |||||||| |
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| T |
32900856 |
tgaagattaaagagaacccaattgaagaatttgaaatgggtatatgagatttttgatgtgaatgtgattctctct |
32900782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 292 - 359
Target Start/End: Complemental strand, 32901015 - 32900948
Alignment:
| Q |
292 |
ggggttgatgaaaatgaagattaaagataacccaattgaagaatttgaagtgggtatgtgagattttg |
359 |
Q |
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|||||||||||||| |||||||||| | |||||| |||||||||||||| ||||| | |||||||||| |
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| T |
32901015 |
ggggttgatgaaaaagaagattaaatagaacccatttgaagaatttgaaatgggtttatgagattttg |
32900948 |
T |
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