View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2845_low_5 (Length: 363)
Name: NF2845_low_5
Description: NF2845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2845_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 11 - 188
Target Start/End: Complemental strand, 1500767 - 1500590
Alignment:
| Q |
11 |
taatagaaatagatggagaaattggcgaactagaagacgattttcaccgtaaggccaattatagagaccgattttaggaaaattgggagttgaggttgag |
110 |
Q |
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| T |
1500767 |
taatagaaatagatggagaaattggcgaactagaagacgattttcatcgtaaggccaattatagagaccgattttaggaaaattggaagttgaggttgag |
1500668 |
T |
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| Q |
111 |
ctttggaaatgagatgaaaaatggttaaatgtttggattttgtgggttacaaatatttcactcaacgctcattccctc |
188 |
Q |
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| T |
1500667 |
ctttggaaatgagatgaaaaatggttaaatgtttggattttgtgggttacaaatatttcactcaacgctcattccctc |
1500590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 269 - 335
Target Start/End: Complemental strand, 1500493 - 1500427
Alignment:
| Q |
269 |
atagatgtctatgccttcatacaatgatgtttccgtaggtatatattttctatacctacgattttat |
335 |
Q |
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| T |
1500493 |
atagatgtctatgccttcatacaatgatgtttccgtaggtatatattttctatacctacgattttat |
1500427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 1504066 - 1503969
Alignment:
| Q |
90 |
aaattgggagttgaggttgagctttggaaatgagatgaaaaatggttaaatgtttggattttgtgggttacaaatatttcactcaacgctcattccctc |
188 |
Q |
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| T |
1504066 |
aaattgagagttgaggttgagttttggaaatgagctg-aaaacgttgaattttttgggttttgcaagttacaaatatttcactcaccactcattccctc |
1503969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 293 - 333
Target Start/End: Complemental strand, 11353753 - 11353713
Alignment:
| Q |
293 |
tgatgtttccgtaggtatatattttctatacctacgatttt |
333 |
Q |
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| T |
11353753 |
tgatttttctgtaggtatatattttctataccaacgatttt |
11353713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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