View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2845_low_6 (Length: 303)
Name: NF2845_low_6
Description: NF2845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2845_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 47837838 - 47838133
Alignment:
| Q |
1 |
ttggtgttggaccagtgatgatgttactttcagcagttgaagggccaatttcccgtagcggcaagaagaaaagtgcatgctgcaaagttgtgtatttcac |
100 |
Q |
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| T |
47837838 |
ttggtgttggaccagtgatgatgttactttcagcagttgaagggccaatttcccgtagcggcaagaagaaaagtgcatgctgcaaagttgtgtatttcac |
47837937 |
T |
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| Q |
101 |
catttggaatgtgttttttgtcaatgtttttaccgggtctattatcagtcaactatcagtgtttactagtataacagaactacctgcccaattggcaaag |
200 |
Q |
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| T |
47837938 |
catttggaatgtgttttttgtcaatgtttttaccgggtctattatcagtcaactatcagtgtttactagtataacagaactacctgcccaattggcaaag |
47838037 |
T |
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| Q |
201 |
gcagtcccagctcaggtgaagtattcatgttccaagatgataaatgacaaattcctattgtaaattatacaccctttgttgtataaatgatgatgt |
296 |
Q |
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| T |
47838038 |
gcagtcccagctcaggtgaagtattcatgttccaagatgataaatgacaaattcctattgtaaattatacaccctttgttgtataaattatgatgt |
47838133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 218
Target Start/End: Complemental strand, 4705778 - 4705571
Alignment:
| Q |
11 |
accagtgatgatgttactttcagcagttgaagggccaatttcccgtagcggcaagaagaaaagtgcatgctgcaaagttgtgtatttcaccatttggaat |
110 |
Q |
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|||| |||||||| || ||||| ||||||| || || |||||||| || || | ||||||||||||||| || |||||| |||| ||||| || |||||| |
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| T |
4705778 |
accattgatgatgctattttcaacagttgagggtcctatttcccgcagtggaaggaagaaaagtgcatgttggaaagttttgtacttcacaatctggaat |
4705679 |
T |
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| Q |
111 |
gtgttttttgtcaatgtttttaccgggtctattatcagtcaactatcagtgtttactagtataacagaactacctgcccaattggcaaaggcagtcccag |
210 |
Q |
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| T |
4705678 |
gtgttttttattaatgttttaactggttctcttataagtcaactttcagtcttttctagcttaaaagagctgcctgcaacacttgcaaaggcagtgccag |
4705579 |
T |
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| Q |
211 |
ctcaggtg |
218 |
Q |
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|||||||| |
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| T |
4705578 |
ctcaggtg |
4705571 |
T |
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