View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_high_13 (Length: 347)
Name: NF2846_high_13
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 43972219 - 43971894
Alignment:
| Q |
1 |
atctccaaaacctttacatcgctgtgaactccatccacacttgtctttgactggtttcccatatagtaagtactctttgaagaagtataataaatattta |
100 |
Q |
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| T |
43972219 |
atctccaaaacctttacatcgctgtgaactccatccacacttgtctttgactggtttcccatatagtaagtactctttgaagaagtataataaatattta |
43972120 |
T |
|
| Q |
101 |
gtagaatagtttttggtgtgtaaggaacgataaagcaggagtatataaataaaatagtagtagtaagatttgaaaggaagatctatgagtgaatgagtaa |
200 |
Q |
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| T |
43972119 |
gtagaatagtttttggtgtgtaaggaacgataaagcaggagtatataaataaaatagtagtagtaagatttgaaaggaagatctatgagtgaatgagtaa |
43972020 |
T |
|
| Q |
201 |
ggtggggaggttggaaatgcattgaaggcaacttgtacgaccctacatgtatatttaatgtgtttcatcaatcttcttcctttctttttcaaatttatat |
300 |
Q |
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| T |
43972019 |
ggtggggaggttggaaatgcattgaaggcaacttgtacgaccctacatgtatatttaatgtgtttcatcaatcttcttcctttctttttcaaatttatat |
43971920 |
T |
|
| Q |
301 |
gtctcactctcacaacgtctctgtgg |
326 |
Q |
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| T |
43971919 |
gtctcactctcacaacgtctctgtgg |
43971894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 19257454 - 19257418
Alignment:
| Q |
256 |
taatgtgtttcatcaatcttcttcctttctttttcaa |
292 |
Q |
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| T |
19257454 |
taatttgtttcatcaatctccttcctttctttttcaa |
19257418 |
T |
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