View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_high_16 (Length: 322)
Name: NF2846_high_16
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 299
Target Start/End: Original strand, 49904867 - 49905146
Alignment:
| Q |
20 |
ggcatcaattgtcaagtatcttctatccaaaggtttgatgaaagagggtgctagcttatgtacaccattttatctgactgatgagaattttcagcgaagg |
119 |
Q |
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| T |
49904867 |
ggcatcaattgtcaagtatcttctatccaaaggtttgatgaaagagggtgctagcttatgtacaccattttatctgactgatgagaattttcagcgaagg |
49904966 |
T |
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| Q |
120 |
tacgtgaggagaatcatctaagctagtaaacctaaatcagggagaatgctaatatcaccgttacaaccagccatattatcttcatgccattctagttgca |
219 |
Q |
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| T |
49904967 |
tacgtgaggagaatcatctaagctagtaaacctaaatcagggagaatgctaatatcaccgttacaaccagccatattatcttcatgccattctagttgca |
49905066 |
T |
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| Q |
220 |
ttcttctgacatgtaggtcgtagttctaattttgcaaacagcctatctggtttggttggggggattcttggttggttgta |
299 |
Q |
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| T |
49905067 |
ttcttctgacatgtaggtcgtagttctaattttgctaacagcctatctggtttggttggggggattctaggttggttgta |
49905146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 49558390 - 49558295
Alignment:
| Q |
31 |
tcaagtatcttctatccaaaggtttgatgaaagagggtgctagcttatgtacaccattttatctgactgatgagaattttcagcgaaggtacgtga |
126 |
Q |
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| T |
49558390 |
tcaagtatcttctatccaaaggtttgatgaagaagggttctagcttatgcacaccatttcatgcaactgatgaggatttccagcgaaggtatgtga |
49558295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 104
Target Start/End: Complemental strand, 49562548 - 49562479
Alignment:
| Q |
35 |
gtatcttctatccaaaggtttgatgaaagagggtgctagcttatgtacaccattttatctgactgatgag |
104 |
Q |
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| T |
49562548 |
gtatcttctttccaaaggtttgatgaagaaggatgctagcttaactgcaccattttatttgactgatgag |
49562479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Complemental strand, 49571397 - 49571339
Alignment:
| Q |
34 |
agtatcttctatccaaaggtttgatgaaagagggtgctagcttatgtacaccattttat |
92 |
Q |
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| T |
49571397 |
agtatcttctttccaaaggtttgatgaagaaggatgctagcttaactgcaccattttat |
49571339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 275
Target Start/End: Complemental strand, 49558176 - 49558099
Alignment:
| Q |
198 |
tcttcatgccattctagttgcattcttctgacatgtaggtcgtagttctaattttgcaaacagcctatctggtttggt |
275 |
Q |
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| T |
49558176 |
tcttcatgtcattgtagttgcagtattctgacatttaggtcataattcatattttggatacagcctctctggtttggt |
49558099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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