View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_high_23 (Length: 255)
Name: NF2846_high_23
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 50 - 239
Target Start/End: Original strand, 34794980 - 34795166
Alignment:
| Q |
50 |
ataattttgataagattaggaagaaggatatatgagagatttggtgaaatagaaggggacagaatagacatccgcccggaaatacagggtgaccgtacaa |
149 |
Q |
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| T |
34794980 |
ataattttgataagattaggaagaaggatatatgagagatttggtgaaatagaaggggacagaatagacatccgcccggaaatacagggtgaccgtacaa |
34795079 |
T |
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| Q |
150 |
caaaaataggaatcacttctcaaacaaaaagtgactcattcactcttacttacttacttactacggtggcacacagtctttgtttttctt |
239 |
Q |
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| T |
34795080 |
ccaaaataggattcacttctcaaacaaaaagtgactcattcattcactcttacttacttactacggtg---cacagtctttgtttttctt |
34795166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 34794840 - 34794878
Alignment:
| Q |
7 |
ccacatagaaaatgagattaaaatcgaagtgagaaatgg |
45 |
Q |
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| T |
34794840 |
ccacatagaaaatgagattaaaatcgaagtgagaaatgg |
34794878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 4275563 - 4275497
Alignment:
| Q |
72 |
gaaggatatatgagagatttggtgaaatagaaggggacagaatagacatccgcccggaaatacaggg |
138 |
Q |
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| T |
4275563 |
gaaggataggtgtgagatttgatgaagtagaaggggacagaatagacatccccccggaaatacaggg |
4275497 |
T |
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