View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_high_28 (Length: 249)
Name: NF2846_high_28
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 35919700 - 35919929
Alignment:
| Q |
1 |
tttatgaaagtgagtaacctgaattgacaatctttatcttctggttaatcagattattgcgtccagttttgcaacagacgttgctaaggaatcaactgca |
100 |
Q |
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| T |
35919700 |
tttatgaaagtgagtaacctgaattgacaatctttatcttctggttaatcagattattgcgtccagttttgcaacagatgttgctaaggaatcaactgca |
35919799 |
T |
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| Q |
101 |
agaattttggctgctgctgcggctcgaaatagtaattctgattcacagaaggttcttgaagagttagaaggacactcgagtcgcctttcaccaacaacta |
200 |
Q |
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| T |
35919800 |
agaattttggctgctgctgcggctcgaaatagtaattctgattcacagaaggttcttgaagagttagaaggacactcgagtcgcctttcaccaacaacta |
35919899 |
T |
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| Q |
201 |
gtatggcaaataatcaggacatgaagtctc |
230 |
Q |
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||| |||||||||||||||||||||||||| |
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| T |
35919900 |
gtacggcaaataatcaggacatgaagtctc |
35919929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 35556350 - 35556182
Alignment:
| Q |
1 |
tttatgaaagtgagtaacctgaattgacaatctttatcttctggttaatcagattattgcgtccagttttgcaacagacgttgctaaggaatcaactgca |
100 |
Q |
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||||| |||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||| || |
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| T |
35556350 |
tttattaaagtgagtaacttgaattaacaatctttatcttctggttaatcagattgttgcgtccagttttgtgacaaacgttgctaaggaatcaact-ca |
35556252 |
T |
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| Q |
101 |
agaattttggctgctgctgcggctcgaaatagtaattctgattcacagaaggttcttgaagagttagaag |
170 |
Q |
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| T |
35556251 |
agaattttgactgctgctgctgctcgaaatagtaattctgattcacagaaggttcttgaagagttagaag |
35556182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 35925427 - 35925508
Alignment:
| Q |
28 |
caatctttatcttctggttaatcagattattgcgtccagttttgcaacagacgttgctaaggaatcaactgcaagaattttg |
109 |
Q |
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||||||||| ||||||||||||||||||||||| || | ||| | |||||||| ||||||||| || || |||||||||| |
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| T |
35925427 |
caatctttaccttctggttaatcagattattgcatcaactttcacgacagacgtcgctaaggaagcaggtgaaagaattttg |
35925508 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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