View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_high_29 (Length: 249)
Name: NF2846_high_29
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 39676239 - 39676003
Alignment:
| Q |
1 |
ttggagtgaatgtcgcggtgacactagaagaagaccaaatgttgaagatttctatgaatcttgtacctcaagccgttgcatcgattgttatgttttctct |
100 |
Q |
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| T |
39676239 |
ttggagtgaatgtcacggtgacactagaagaagaccaaatgttgaagatttctatgaatcttgtacctcaagtcgttgcatcgattgttatgttttctct |
39676140 |
T |
|
| Q |
101 |
tttcaagggtatatttgtaacaagcttaaacttactatacaatatcttacaaaattttgtgttagattatcttattttctttcgtaggatctgtctataa |
200 |
Q |
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| T |
39676139 |
tttcaagggtatat--gtaacaagcttaaacttactatacaatatcttacaaaattttgtgttagattatcttattttcttttgtaggatctgtctataa |
39676042 |
T |
|
| Q |
201 |
tttcagagtctcttagattttcttaggactatttttcat |
239 |
Q |
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| T |
39676041 |
tttcagagtctcttagattttcttaggactatttttcat |
39676003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 130
Target Start/End: Original strand, 30979847 - 30979892
Alignment:
| Q |
85 |
ttgttatgttttctcttttcaagggtatatttgtaacaagcttaaa |
130 |
Q |
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| T |
30979847 |
ttgttatattttctcttttgaagggtatatttgtaaaaagtttaaa |
30979892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Original strand, 23013 - 23051
Alignment:
| Q |
92 |
gttttctcttttcaagggtatatttgtaacaagcttaaa |
130 |
Q |
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| T |
23013 |
gttttctcttttaaagggtatatttgtaacaagtttaaa |
23051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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