View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_high_4 (Length: 568)
Name: NF2846_high_4
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 7 - 552
Target Start/End: Complemental strand, 54968082 - 54967538
Alignment:
| Q |
7 |
ctgaaatgaagaaacagcaatccatcattaccatcgcttttcaacactagtcattacctcatgaattgaagaaacagcattttaacactaccatccttaa |
106 |
Q |
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| T |
54968082 |
ctgaattgaagaaacagcaatccatcattaccatcgcttttcaacactagtcattacctcatgaattgaagaaacaacattttaacactaccatccttaa |
54967983 |
T |
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| Q |
107 |
actagcatacttatggtagctgcactaggcttaatatgcattttgatgagggtcaattctataagagtagcactcatatgaaacatcgggtgatttgaag |
206 |
Q |
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| T |
54967982 |
actagcatacttatggtagccgcactaggcttaatatgcattttgatgagggtcaattctataagagtagcactcatatgaaacatcgggtgatttgaag |
54967883 |
T |
|
| Q |
207 |
ccaaagacatcctaacttttgaactaaatgttcccttgaggataaacatcgttctcagccggtccccattcttgattccccctcctccaaggaaacaata |
306 |
Q |
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| T |
54967882 |
ccaaagacatcctaacttttgaactaaatgttcccttgaggataaacatcgttctcagccggtccccattcttgatt-cccctcctccaaggaaacaata |
54967784 |
T |
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| Q |
307 |
tcaaagattttattaacatgttgtttgtccttataccgatgttcccagttaatcaggtagacttaaacaatataatttggttatccaaataagagtttga |
406 |
Q |
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|||||||||||||||| |||||| ||||||||| ||||||||||||||||| ||||||||||| ||||||||||| | |||||||||||||| ||||||| |
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| T |
54967783 |
tcaaagattttattaaaatgttggttgtccttaaaccgatgttcccagttagtcaggtagactgaaacaatataaataggttatccaaataatagtttga |
54967684 |
T |
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| Q |
407 |
cttgtatattaaatcttgtttcaaactcagttataagttgtatttgattattcacccatggattaatggcaaaatgaatttggatggccacatgaaaatc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54967683 |
cttgtatattaaatcttgtttcaaactcagttataatttgtatttgattattcacccatggattaatggcaaaatgaatttggatggccacatgaaaatc |
54967584 |
T |
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| Q |
507 |
aataaagtaaggatactagaaaattggaggttgctaatgagatttc |
552 |
Q |
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| T |
54967583 |
aataatgcaaggatactagaaaattggaggttgctaatgagatttc |
54967538 |
T |
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