View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_high_6 (Length: 491)
Name: NF2846_high_6
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 218 - 476
Target Start/End: Complemental strand, 32328465 - 32328207
Alignment:
| Q |
218 |
tatgttactgtaccatacgtacgatgtacgacaacataattaaaagagcttatgaagctgaaacaggaaatatagctgttatagcatcaagatttagttt |
317 |
Q |
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| T |
32328465 |
tatgttactgtaccatacgtacgatgtacgacaacataattaaaagagcttatgaagctgaaacaggaaatatagctgttgtagcatcaaaatttagttt |
32328366 |
T |
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| Q |
318 |
ggtttcccatgctatagactttaagaagaaagagaatgatgagaagagaaaatagtgtcgtttagtttagttttgaactatggacatgatattttgaagg |
417 |
Q |
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| T |
32328365 |
ggtttcccatgctatagactttaagaagaaagagaatgatgagaagagaaaatagtgtcgtttagtttagttttgaactatggacatgatgttttgaagg |
32328266 |
T |
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| Q |
418 |
tcgttttctatgttggtttttcttctcttccataatactaatgatggcttgtaatgtat |
476 |
Q |
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| T |
32328265 |
tcgttttctatgttggtttttcttctcttccataatactaatgatggcttgtaatgtat |
32328207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 32328671 - 32328510
Alignment:
| Q |
13 |
gaagcatatgtaatgtaatgtgtcggcgtgtttaatccaaccgttaaaaccaacaagcaatggtgcatcacgtgggccacacgtgcgctgtaaagtgaaa |
112 |
Q |
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| T |
32328671 |
gaagcatatgtaatgtaatgtgtcggcgtgtttaatccaaccgttaaaaccaacaagcaatggtgcatcacgtgggccacacgtgcgctgtaaagtgaaa |
32328572 |
T |
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| Q |
113 |
atacacagcaaacagaaagtgacttgccatgcctatgcctaatgtcttgtgccccaacacac |
174 |
Q |
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| T |
32328571 |
atacacagcaaacagaaagtgacttgccatgcctatgcctaatgtcttgtgccccaacacac |
32328510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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