View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_high_7 (Length: 415)
Name: NF2846_high_7
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 11 - 398
Target Start/End: Complemental strand, 14128710 - 14128322
Alignment:
| Q |
11 |
cagagacaatactgatactgacacattgatatagataataatttgagatttttgtctgaatgttacaaatgtgccggcgtcatgta-gtgtcagttctac |
109 |
Q |
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| T |
14128710 |
cagagacaataatgatactgacacattgatacagataataatttgagatttttttctgaatgtcacaaatgtgccggcgtcgtgtaagtgtcagttctac |
14128611 |
T |
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| Q |
110 |
atagcaatatgcaattgaataaataaataaaagaaatttgatgagttaattctactttcaagaaacataccttgtgaagaagatatctacttccccttac |
209 |
Q |
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| T |
14128610 |
atagcaatatacaattgaataaataagtaaaagaaatttgatgagttaattctactttcaagaaacataccttgtgaagaagatatctacttccccttac |
14128511 |
T |
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| Q |
210 |
ttgaattatgagatcactagaaacttcagaagagattgtcctgcatatacaaagaaaagaaatcatgttacaaaattaaacaagccaaaaaggagataca |
309 |
Q |
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| T |
14128510 |
ttgaattatgagatcactagaaacttcagaagagattgtcctgcatatacaaagaaaagaaatcatgttacaaaattaaacaagccaaaaaggagataca |
14128411 |
T |
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| Q |
310 |
tcatcaaagaacaaagatgaaatttatttttgttaatgtcttaccttatagcttctgaagtgtagaaagtatctggacgagatccaagt |
398 |
Q |
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| T |
14128410 |
tcatcaaagaacaaagatgaaatttatttttgttaatgtcttaccttatagcttctgaagtgtagaaagtatctggacgagatccaagt |
14128322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 165 - 267
Target Start/End: Complemental strand, 29015086 - 29014984
Alignment:
| Q |
165 |
tttcaagaaacataccttgtgaagaagatatctacttccccttacttgaattatgagatcactagaaacttcagaagagattgtcctgcatatacaaaga |
264 |
Q |
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|||||||||||||||||||||||||||||||||| |||| | ||||||||||| |||||||| |||||||||||||| | || |||| ||||||||||| |
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| T |
29015086 |
tttcaagaaacataccttgtgaagaagatatctagttcctttcacttgaattataagatcacttgaaacttcagaagaaactgacctgaatatacaaaga |
29014987 |
T |
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| Q |
265 |
aaa |
267 |
Q |
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||| |
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| T |
29014986 |
aaa |
29014984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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