View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_high_8 (Length: 400)
Name: NF2846_high_8
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 382
Target Start/End: Original strand, 10333394 - 10333747
Alignment:
| Q |
12 |
atgaagtaaacgaaaaataagaaagtgttgatccaaaactattcaggaagcttattggatcactaaggtacgtatctatgtcaaagcaaaccgaatattc |
111 |
Q |
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| T |
10333394 |
atgaagtgaaagaaaaagaagaaagtgttgatccaacactattcatgaagcttattgaatcgctaaggta----tctatgtcaaagcagaccgaatattc |
10333489 |
T |
|
| Q |
112 |
gctattcagttgaaatggtgaccaagttcatgagtaatcatcttaaaactcatttcttagtcgttaaaagaataccgaggtacataaatgggacactaca |
211 |
Q |
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| T |
10333490 |
gctattcagttgaaatggtgaccaagttcatgagtaatcatcttaa-------------gtcgttaaaagaataccgaggtacataaatgggacactaca |
10333576 |
T |
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| Q |
212 |
tcatggcatcgtattttctactggaaaaagatttgagcaactcaacatgataggttactcatatgctaatagtttttgtgttcatatttcaaggagccct |
311 |
Q |
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| T |
10333577 |
tcatggcatcctattttctactggagaaagatttgagcaactcaacatgataggttactcatatgctaatagtttttgtgttcatattacaaggagccct |
10333676 |
T |
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| Q |
312 |
tatttcttggtcatttaagaagtagtcatttgtggctctctcaagttctgaggctgagtatgtgctggaag |
382 |
Q |
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| T |
10333677 |
tatttcttggtcatttaagaagtagtcatttgtggctctctcaagttctgaggctgagtatgtgctggaag |
10333747 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 171
Target Start/End: Original strand, 14640496 - 14640553
Alignment:
| Q |
114 |
tattcagttgaaatggtgaccaagttcatgagtaatcatcttaaaactcatttcttag |
171 |
Q |
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| T |
14640496 |
tattcagttggaattgttagcaagttcatgagtaaccctctcaaaactcatttcttag |
14640553 |
T |
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