View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2846_low_1 (Length: 854)
Name: NF2846_low_1
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_low_1 |
 | |
|
| [»] scaffold0201 (3 HSPs) |
| | |
|
| [»] scaffold0570 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-165; HSPs: 33)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 458 - 836
Target Start/End: Original strand, 23464223 - 23464601
Alignment:
| Q |
458 |
ttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttgattcatcc |
557 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | |||||| |||||||||||||||||||||| |
|
|
| T |
23464223 |
ttctatgtaggatgcatcgggatgaattttttcttcctctaacaatgaagacaaaagtttattgtgtagaccattgactccatacttgtttgattcatcc |
23464322 |
T |
|
| Q |
558 |
attacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgccccatattc |
657 |
Q |
| |
|
||||||| | |||||||| | |||| ||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23464323 |
attacatagtggaagcaaagaacttcaaattgggaataaagtttaccaaataaagtcctagcaatggtggtctttcctatgccacccatgccccatattc |
23464422 |
T |
|
| Q |
658 |
caatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatatgggtatct |
757 |
Q |
| |
|
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
23464423 |
caatgattataacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagcccattaatatcatatgggtatct |
23464522 |
T |
|
| Q |
758 |
aagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaagaggggaa |
836 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23464523 |
aggattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaagaggggaa |
23464601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 463 - 836
Target Start/End: Original strand, 23405597 - 23405970
Alignment:
| Q |
463 |
tgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttgattcatccattac |
562 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||||||||||||||||| |
|
|
| T |
23405597 |
tgtaggatgcatcgggatgaattttttcttcctctaacaatgaagacaaaagtttattgtgtagaccattgactccatacttgtttgattcatccattac |
23405696 |
T |
|
| Q |
563 |
attgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgccccatattccaatg |
662 |
Q |
| |
|
|| | |||||||| | |||| ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23405697 |
atagtggaagcaaagaacttcaaattgggaataaagtttaccaaataaagtcctagcaatggtggtctttcctatgccacccatgccccatattccaatg |
23405796 |
T |
|
| Q |
663 |
actctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatatgggtatctaagat |
762 |
Q |
| |
|
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||| |
|
|
| T |
23405797 |
attttaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccctttaatgtcatatgggtatctaggat |
23405896 |
T |
|
| Q |
763 |
tcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaagaggggaa |
836 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23405897 |
tcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaagaggggaa |
23405970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 13 - 454
Target Start/End: Original strand, 23385689 - 23386118
Alignment:
| Q |
13 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
112 |
Q |
| |
|
||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
23385689 |
gagatgaacaaccattgagtaaaagtacacagagagattttgaatgaatgttggatttaaggctttcaatctttatgcaacctcttaaatctagatatat |
23385788 |
T |
|
| Q |
113 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| || ||| ||||||||| |||||||||||||||| ||| |
|
|
| T |
23385789 |
aattcgagggagagaaaagatggatggatggagctgacgcaggctttcacattccgagagatgtattctgtcaagatttatagccctagataagtctggg |
23385888 |
T |
|
| Q |
213 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaa |
312 |
Q |
| |
|
||||||||||||||||||||||| | |||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23385889 |
atctcaatcagatctttggaggattcaagccaaagtactcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaa |
23385988 |
T |
|
| Q |
313 |
acaaaacctagttaaacataaagagaaacatcctagctctgctgcaattttgtgaaaaacatttgtacctgaactccatcccagagctttttaagcttgc |
412 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23385989 |
acaaaacctagtt------------aaacatcctagctctgctgcaattttgtgaaaaacatttgtacctgaactccatcccagagctttttaagcttgc |
23386076 |
T |
|
| Q |
413 |
tttgatccatggaaagctctacaagcatttcagcacaaaagg |
454 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
23386077 |
tttgattcatgcaaagctctacaagcatttcagcacaaaagg |
23386118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 13 - 454
Target Start/End: Original strand, 23462679 - 23463120
Alignment:
| Q |
13 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
112 |
Q |
| |
|
||||||||||||||| |||||||||| || ||||||||||||||||||||| | |||||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
23462679 |
gagatgaacaaccattgagtaagagttgacgaagagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctagatattg |
23462778 |
T |
|
| Q |
113 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
212 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| ||||||||||||||||||||||||| ||| |
|
|
| T |
23462779 |
aagttgagggagagaaaagatggatggatggagttgacgcaagctttcacattccgagagaagtacaacaacaagatttgtagccctagataagtctggg |
23462878 |
T |
|
| Q |
213 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaa |
312 |
Q |
| |
|
||||||||||||||||||||||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23462879 |
atctcaatcagatctttggaggatcgaagccaaagtgttcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaa |
23462978 |
T |
|
| Q |
313 |
acaaaacctagttaaacataaagagaaacatcctagctctgctgcaattttgtgaaaaacatttgtacctgaactccatcccagagctttttaagcttgc |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23462979 |
acaaaacctagttaaacataaagagaaacatcctagctctgctgcaatttagtgaaaaacatttgtacctgaactccatcccagagctttttaagcttgc |
23463078 |
T |
|
| Q |
413 |
tttgatccatggaaagctctacaagcatttcagcacaaaagg |
454 |
Q |
| |
|
| ||| |||| |||| | ||||||||||||||||||||||| |
|
|
| T |
23463079 |
tatgactcatgcaaagatatacaagcatttcagcacaaaagg |
23463120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 452
Target Start/End: Original strand, 23404060 - 23404487
Alignment:
| Q |
13 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
112 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||||||||||||| | |||||||||| |||| |||||||||||||||| ||||||||| |
|
|
| T |
23404060 |
gagatgaacaaccattgagtaagagttgacaaagagattttgaatgaatgtttgttttaaggctttcaatacttatgcaacctcttaagtctagatattg |
23404159 |
T |
|
| Q |
113 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
212 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||| |||||||||| |||| ||| | ||||||||||||||||||||||||| ||| |
|
|
| T |
23404160 |
aagttgagggagagaaaagatggatggatggagttgacgcaagctttcacattccgagagaagtacaatagcaagatttgtagccctagataagtctggg |
23404259 |
T |
|
| Q |
213 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaa |
312 |
Q |
| |
|
||||||||||||||||||||||| | |||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23404260 |
atctcaatcagatctttggaggattcaagccaaagtgttcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaa |
23404359 |
T |
|
| Q |
313 |
acaaaacctagttaaacataaagagaaacatcctagctctgctgcaattttgtgaaaaacatttgtacctgaactccatcccagagctttttaagcttgc |
412 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23404360 |
acaaaacctagtt------------aaacatcctagctctgctgcaattttgtgaaaaacatttgtacctgaactccatcccagagctttttaagcttgc |
23404447 |
T |
|
| Q |
413 |
tttgatccatggaaagctctacaagcatttcagcacaaaa |
452 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
23404448 |
tttgagccatgcaaagctctacaagcatttcagcacaaaa |
23404487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 450 - 836
Target Start/End: Original strand, 23448228 - 23448614
Alignment:
| Q |
450 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
549 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| | |||||||| |||||||||||||| |
|
|
| T |
23448228 |
aaaggggcttctatgtaggatgcatcaggatgaatattttcttcctctaacaatgaagacagaagtttattgtgtagaacattgagtccatacttgtttg |
23448327 |
T |
|
| Q |
550 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
649 |
Q |
| |
|
||||||||||||||||||||| |||| | ||||||||| ||||| || ||||| ||||||| ||| ||| || ||||||||||||||| ||||||||||| |
|
|
| T |
23448328 |
attcatccattacattgaggacgcaacgaccttcgaattgggaaaaatgtttagcatataatgtcttagcaagggtggtctttcctatcccacccatgcc |
23448427 |
T |
|
| Q |
650 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
749 |
Q |
| |
|
||||||||||| ||||| || |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23448428 |
ccatattccaagtactctgacttcatttgacccaattttcagcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
23448527 |
T |
|
| Q |
750 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaagaggggaa |
836 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
23448528 |
gggtacctaatattcagtttccgcaaaacatcttcaacaatgtctttaatgaagtctggttcactcctaacatatgaaagatgggaa |
23448614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 450 - 833
Target Start/End: Original strand, 23499996 - 23500379
Alignment:
| Q |
450 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
549 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||| |
|
|
| T |
23499996 |
aaaggggcttctatgtaggatgcatcaggatgaatattttcttcctctaacaatgaagacaaaagtttattgagtacaacattaagtccatacttgtttg |
23500095 |
T |
|
| Q |
550 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
649 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| | ||||| | |||| ||||||||| ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
23500096 |
attcatccattacattgagtaagcaacaaccttcgaattgagaatacattttagcatataaagccctagcaagggtggtctttcctatgccacccatgcc |
23500195 |
T |
|
| Q |
650 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
749 |
Q |
| |
|
||||||||||| |||||| || |||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| |
|
|
| T |
23500196 |
ccatattccaaggactctgacttcatgtgacccaattttcagcattgattcaatttgtttataattcttctcaattccaacaagacccttaatttcatat |
23500295 |
T |
|
| Q |
750 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaagaggg |
833 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
23500296 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatgtccttaatgaaatctggttcactcctaacataggaaagaggg |
23500379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 450 - 805
Target Start/End: Original strand, 23454993 - 23455348
Alignment:
| Q |
450 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
549 |
Q |
| |
|
|||||| ||||| |||||| |||||||||||||| |||||||||| |||||||||||| ||||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
23454993 |
aaagggacttctatgtagggtgcatcaggatgaagattttcttcctataacaatgaagataaaagtttattgtatacaacattgagtccatacttgtttg |
23455092 |
T |
|
| Q |
550 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
649 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||| ||| || ||| ||||||||||||||||||||||| |
|
|
| T |
23455093 |
attcatccattacattgaggaagcaacgaccttcgaattgggaataaagtttagcatataaagtcttagcaagggttgtctttcctatgccacccatgcc |
23455192 |
T |
|
| Q |
650 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
749 |
Q |
| |
|
||||||||||| |||| ||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
23455193 |
ccatattccaaggactttaacatcatttgacccaattttcagcattgattcaatttgtttataatttttctcaattccaacaagacccttaatttcatat |
23455292 |
T |
|
| Q |
750 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtc |
805 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||| | ||||||||||| |
|
|
| T |
23455293 |
gggtatctaagatttagtttccttaaaacatcttcaacaatgtccttaatgaagtc |
23455348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 458 - 832
Target Start/End: Original strand, 23352883 - 23353257
Alignment:
| Q |
458 |
ttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttgattcatcc |
557 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| | | |||||| |||||||||||||||||||||| |
|
|
| T |
23352883 |
ttctatgtaggatgcatcaggatgaagattttcttcctctaacaatgaagaaaaaaatttattgtgtagaccattgactccatacttgtttgattcatcc |
23352982 |
T |
|
| Q |
558 |
attacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgccccatattc |
657 |
Q |
| |
|
|||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
23352983 |
attacattgaggaagcaacgaccttcgaattgggaataaagtttagcatataaagtcctagcaagggtggtctttcctatgccacccatgccccatattc |
23353082 |
T |
|
| Q |
658 |
caatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatatgggtatct |
757 |
Q |
| |
|
||| || || ||||||||||||| |||||| || |||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
23353083 |
caaggattccaacatcatttgactcaattttcagtattgattcaatttggtcataatttttctcaactccaacaagccccttaatttcatatgggtatct |
23353182 |
T |
|
| Q |
758 |
aagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaagagg |
832 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| | ||||| ||||| || ||| ||||| ||| |||||||| |
|
|
| T |
23353183 |
aagatttagtttctgcaaaacatcttcaacaatgtccttaataaagtccgattcaatcctagcatgcgaaagagg |
23353257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 36 - 323
Target Start/End: Original strand, 23351374 - 23351661
Alignment:
| Q |
36 |
agttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgtaattcgagggagagaaaagatgg |
135 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| || |||||||||| || ||| |||||||||||||||||||| |
|
|
| T |
23351374 |
agtttacaaagagattttgaatgaatgttggttttaaggctttcaatctttatgcaatcttctaaatctagaaatataagtcgagggagagaaaagatgg |
23351473 |
T |
|
| Q |
136 |
atggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcagggatctcaatcagatctttggagga |
235 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
23351474 |
atggatggagctgacgcaggctttcacattgacagagatatactctttcaagatttgtagccctagataagtctgggatctcaatcagatctttggagga |
23351573 |
T |
|
| Q |
236 |
ctgaagcataattgatcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaaacaaaacctag |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
23351574 |
ttgaagcataattgatcttagattcacaagattctgtaataagaaataaacatgcatgagttttgattaaaagagaaacaaaacctag |
23351661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 450 - 836
Target Start/End: Original strand, 23479517 - 23479906
Alignment:
| Q |
450 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
549 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||| |
|
|
| T |
23479517 |
aaaggggcttctatgtaggatgcatcaggatgaatattttcttcctctaacaatgaagacaaaagtttattgagtacaacattaagtccatacttgtttg |
23479616 |
T |
|
| Q |
550 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
649 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||| | ||||| | |||| ||||||||| ||||| || ||||||||||||||||||||||||||| |
|
|
| T |
23479617 |
attcatccattacattgagtaagcaacaaccttcgaattgagaatacattttagcatataaagccctagcaagggtggtctttcctatgccacccatgcc |
23479716 |
T |
|
| Q |
650 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagcc---ccttaatttca |
746 |
Q |
| |
|
||||||||||| |||||| || |||| ||||||||||| || | ||||||||||||| || ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
23479717 |
ccatattccaaggactctgacttcatgtgacccaattttcagctttgattcaatttggtcataatttttctcaattccaacaagcccggccttaatttca |
23479816 |
T |
|
| Q |
747 |
tatgggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaagaggggaa |
836 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||| || | ||||||||| ||| ||| ||||| |||| |||||||||||| |
|
|
| T |
23479817 |
tatgggtatttaagattcagtttctgcaaaacatcttcaacgatatccttaatgaagcgtgattcagtcctagcatacgaaagaggggaa |
23479906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 450 - 808
Target Start/End: Original strand, 23387210 - 23387568
Alignment:
| Q |
450 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
549 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||| ||||| || ||||| ||| |||| |
|
|
| T |
23387210 |
aaaggggattctatgtaggatgcataaggatgaagattttcttcctctaacaatgaagacagaagtttattgtataaaacatcgagtccatgcttttttg |
23387309 |
T |
|
| Q |
550 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
649 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| ||| |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| |
|
|
| T |
23387310 |
attcatccattacattgaggaagcaacgaccttcaaattgggaataaagtttaccatataaagtcttagcaagggtggtctttcctatgccacccatgcc |
23387409 |
T |
|
| Q |
650 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
749 |
Q |
| |
|
||||||||||| |||||| ||||||||||||| ||||| || |||||| ||||| || || ||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
23387410 |
ccatattccaaggactctgacatcatttgaccaaattttcagcattgaatcaatctgctcataagttttctcaattccaacaatccccttaatttcatat |
23387509 |
T |
|
| Q |
750 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctga |
808 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||| |||||| | |||||||||||||| |
|
|
| T |
23387510 |
gggtatctaagattcagcttctgcaagacatctttgacaatgtccttaatgaagtctga |
23387568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 450 - 836
Target Start/End: Original strand, 23440849 - 23441235
Alignment:
| Q |
450 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
549 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
23440849 |
aaagtggcttctatgtaggatgcatcaggatgaatattttcctcctctaacaatgaggataaaagtttattgtatacaacattatgtccatacctgtttg |
23440948 |
T |
|
| Q |
550 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
649 |
Q |
| |
|
||||||| ||||||||||| |||||| ||||| ||| | ||||||| | || ||||| ||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
23440949 |
attcatcaattacattgagaaagcaacaaccttcaaattgagaataaattatagcatatgaagccctagcaagagtggtctttcctatgccacccatgcc |
23441048 |
T |
|
| Q |
650 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
749 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| || ||||| |||||||| || ||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
23441049 |
ccatattccaaggactctaacatcatttgagccaattttcagtattgactcaatttggtcataatttttctcaactccaacaagccccttaatttcacat |
23441148 |
T |
|
| Q |
750 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaagaggggaa |
836 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||| | ||||||||||| || || ||||| ||||||| |||||||| |
|
|
| T |
23441149 |
gggtatctaagattcagtttccgcaaaacatttttaacaatgtccttaatgaagtccgattcgatcctagaatatgaacgaggggaa |
23441235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 450 - 836
Target Start/End: Original strand, 23473381 - 23473767
Alignment:
| Q |
450 |
aaaggggcttctgtgtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttg |
549 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
23473381 |
aaagtggcttctatgtaggatgcatcaggatgaatattttcctcctctaacaatgaggataaaagtttattgtatacaacattatgtccatacctgtttg |
23473480 |
T |
|
| Q |
550 |
attcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgcc |
649 |
Q |
| |
|
||||||||||||||||||| |||||| ||||| ||| | ||||||| | || ||||| ||| ||||| || |||||||||||||||||||||||||| |
|
|
| T |
23473481 |
attcatccattacattgagaaagcaacaaccttcaaattgagaataaattatagcatatgaagccctagcaagagtggtctttcctatgccacccatgcc |
23473580 |
T |
|
| Q |
650 |
ccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatat |
749 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||| || ||||| |||||||| || ||||||||||||| |||||||||||||||||||||| || |
|
|
| T |
23473581 |
ccatattccaaggactctaacatcatttgagccaattttcagtattgactcaatttggtcataatttttctcaactccaacaagccccttaatttcacat |
23473680 |
T |
|
| Q |
750 |
gggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaagaggggaa |
836 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||||| | ||||||||||| || || ||||| ||||||||||| |||| |
|
|
| T |
23473681 |
gggtaactaagattcagtttccgcaaaacatatttaacaatgtccttaatgaagtccgattcgatcctagaatatgaaagagaggaa |
23473767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 13 - 368
Target Start/End: Original strand, 23439253 - 23439614
Alignment:
| Q |
13 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
112 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||| | |||||||||| |||| | |||||||||| |||||||||| |||| |
|
|
| T |
23439253 |
gagatgaacaaccatccagtaagagttcacgaagagattttgaatgaatgttcgttttaaggctttcaatagtaatgcaacctcctaaatctagaaatgt |
23439352 |
T |
|
| Q |
113 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
212 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||| |||||||||| ||| |||| || ||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
23439353 |
aagtcgagggagagaaaagatggatggatggagctgacgcaagctttcacattgacagagagatgctcttccaagatttgtagccctagataagtcgggg |
23439452 |
T |
|
| Q |
213 |
atctcaatcagatctttggaggactgaagcataattgatcttaga-ttcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagaga |
311 |
Q |
| |
|
||||||||||||||||||||| | | ||| |||| ||||| || |||||||||||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
23439453 |
atctcaatcagatctttggagtaattaaggcagattgtgattagattttacaagattctgtaacaagaaataaacatgcataagtgttgattaaaagaga |
23439552 |
T |
|
| Q |
312 |
aacaaaacctagttaaacataaagaga-----aacatcctagctctgctgcaattttgtgaa |
368 |
Q |
| |
|
|||||||||||||||| ||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
23439553 |
aacaaaacctagttaagaataaatagaggcatgtcatcctagctctgctacaattttgtgaa |
23439614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 147; E-Value: 5e-77
Query Start/End: Original strand, 45 - 327
Target Start/End: Original strand, 23471821 - 23472103
Alignment:
| Q |
45 |
agagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgtaattcgagggagagaaaagatggatggatgga |
144 |
Q |
| |
|
||||| ||||||||||| |||| |||||||||| | |||||||||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||| |
|
|
| T |
23471821 |
agagaatttgaatgaatattggttttaaggctttcgatctttatgcaacctcctaaatctagtacaataagtcgagggagagaaaagatgtatggatgga |
23471920 |
T |
|
| Q |
145 |
gttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcagggatctcaatcagatctttggaggactgaagcat |
244 |
Q |
| |
|
| |||||||||||||||||| | ||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | | ||| | |
|
|
| T |
23471921 |
gatgacgcaggctttcacatttatagagatgtactttttcaagatttgtagccctagataagtttgggatctcaatcagatctttggagtaattaaggct |
23472020 |
T |
|
| Q |
245 |
aattgatcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaaacaaaacctagttaa |
327 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
23472021 |
aaatgtgattagattcacaagattctgtaacaagaaataaacatgcattagtgtcgattaaaagagaaacaaaacctagttaa |
23472103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 137; E-Value: 4e-71
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 23498403 - 23498675
Alignment:
| Q |
13 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
112 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||| | |
|
|
| T |
23498403 |
gagaagaacaaccatcgagtaagagttcacaaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatct |
23498502 |
T |
|
| Q |
113 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
212 |
Q |
| |
|
|| ||||||||||||||| || | |||||| |||| ||||||||||||| || ||||||||||| | ||||||||||||| |||||||||| ||| |
|
|
| T |
23498503 |
aagatcagggagagaaaagatcgaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctggg |
23498602 |
T |
|
| Q |
213 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaacaagaaataaa |
285 |
Q |
| |
|
||||||||||||| ||||||||| | |||| || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
23498603 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa |
23498675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 135; E-Value: 7e-70
Query Start/End: Original strand, 19 - 285
Target Start/End: Original strand, 23477960 - 23478226
Alignment:
| Q |
19 |
aacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgtaattcg |
118 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
23477960 |
aacaaccatcaagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaagatc |
23478059 |
T |
|
| Q |
119 |
agggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcagggatctca |
218 |
Q |
| |
|
||||||||||||||| || | |||||| |||| ||||||||||||| || ||||||||||| | ||||||||||||| |||||||||| ||||||||| |
|
|
| T |
23478060 |
agggagagaaaagatagaagaatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctgggatctca |
23478159 |
T |
|
| Q |
219 |
atcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaacaagaaataaa |
285 |
Q |
| |
|
||||||| ||||||||| | |||| || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
23478160 |
atcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaacaagaaataaa |
23478226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 13 - 285
Target Start/End: Original strand, 23446654 - 23446926
Alignment:
| Q |
13 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
112 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| |||| ||| ||||||||||||| | |
|
|
| T |
23446654 |
gagatgcacaaccatcgagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcagtctcgtaaatctagatatct |
23446753 |
T |
|
| Q |
113 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
212 |
Q |
| |
|
|| |||||||||||||||||| |||||||| |||| ||||||||||||| || ||||||||||| | ||||||||||||| |||||||||| ||| |
|
|
| T |
23446754 |
aagatcagggagagaaaagatggaaggatggagctgacccaggctttcacattgaaaaagatatactctatgaagatttgtagccttagataagtctggg |
23446853 |
T |
|
| Q |
213 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaacaagaaataaa |
285 |
Q |
| |
|
||||||||||||| ||||||||| | |||| || | |||||||||||||||||||||| |||||||||| |
|
|
| T |
23446854 |
atctcaatcagatttttggaggattcaagccaaagtatgtttagattcacaagattctgtaaaaagaaataaa |
23446926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 17 - 288
Target Start/End: Original strand, 23453434 - 23453701
Alignment:
| Q |
17 |
tgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgtaatt |
116 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||| ||||||||| ||||||||||||| ||| |
|
|
| T |
23453434 |
tgaacaaccatcgagtaagagttcacgaagagattttgaatgaatgttggttttaaggctttcaatctttttgcaacctcgtaaatctagatatctaaga |
23453533 |
T |
|
| Q |
117 |
cgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcagggatct |
216 |
Q |
| |
|
||||||| | |||||||| |||||||| |||| ||||||||||||| || | | |||| | |||||||||| || |||||||||| ||||||| |
|
|
| T |
23453534 |
tcagggagacagaagatggaaggatggagctgacacaggctttcacat----tgaaaaacactccatgaagatttgtatccttagataagtctgggatct |
23453629 |
T |
|
| Q |
217 |
caatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaacaagaaataaacat |
288 |
Q |
| |
|
||||||||||||||||||| | |||| | | ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23453630 |
caatcagatctttggaggattcaagccggagtatgtttagattcacaagattctgtaacaataaataaacat |
23453701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 682 - 808
Target Start/End: Original strand, 21087588 - 21087714
Alignment:
| Q |
682 |
caatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatatgggtatctaagattcagtttccgcaaaacatc |
781 |
Q |
| |
|
||||||||| |||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||| |
|
|
| T |
21087588 |
caatttccagtattggttcaaattgttcgtaatttttctcaactccaacaagccccttaatttcatattgccatctaagattcagtttctgcaaaacatc |
21087687 |
T |
|
| Q |
782 |
ttcaacaatggctttaatgaagtctga |
808 |
Q |
| |
|
||| |||||| ||||||||||||| |
|
|
| T |
21087688 |
ttcgacaatgttcataatgaagtctga |
21087714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 371 - 454
Target Start/End: Original strand, 23453816 - 23453899
Alignment:
| Q |
371 |
acatttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaagg |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||| |
|
|
| T |
23453816 |
acatttgtacctgaactccatcccagagctttttaagcttgctatgacccatgtgaagctctatgagcatttcagcacaaaagg |
23453899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 374 - 453
Target Start/End: Original strand, 23472204 - 23472283
Alignment:
| Q |
374 |
tttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaag |
453 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
23472204 |
tttgtacctgaactccatcccagagctttttaagcttgctatgagtcatgtgaagctctacaagcatttcagcacaaaag |
23472283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 373 - 453
Target Start/End: Original strand, 23439668 - 23439748
Alignment:
| Q |
373 |
atttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaag |
453 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||| ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
23439668 |
atttgtacctgaactccatctcagagatttttaagcttgctatgagtcatgctaagctctacaagcatttcagcacaaaag |
23439748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 23351699 - 23351778
Alignment:
| Q |
375 |
ttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaagg |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| |||| |||||| | |||||||||||||||||||| |
|
|
| T |
23351699 |
ttgtacctgaactccatcccagagctttttaagcttgcaatgagtcatgtgaagctcaataagcatttcagcacaaaagg |
23351778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 371 - 454
Target Start/End: Original strand, 23447046 - 23447129
Alignment:
| Q |
371 |
acatttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaagg |
454 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||| || | |||||||| ||||||||||||||||||| |
|
|
| T |
23447046 |
acatttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcatttcagcacaaaagg |
23447129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 371 - 454
Target Start/End: Original strand, 23478346 - 23478429
Alignment:
| Q |
371 |
acatttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaagg |
454 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| ||| || | |||||||| ||||||||||||||||||| |
|
|
| T |
23478346 |
acatttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcatttcagcacaaaagg |
23478429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 624 - 827
Target Start/End: Original strand, 36003639 - 36003845
Alignment:
| Q |
624 |
gtggtctttcctatgccacccatgccccatattccaa-tgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctca |
722 |
Q |
| |
|
|||||||||||||| || ||||| ||||||| ||||| ||| |||||||||||||||| ||||| || | ||||||| | | ||| || ||||||||| |
|
|
| T |
36003639 |
gtggtctttcctataccgcccattccccataatccaagtga-tctaacatcatttgacaaaattttcagtaatgattcagtctcttcatactttttctca |
36003737 |
T |
|
| Q |
723 |
attccaacaa---gccccttaatttcatatgggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaa |
819 |
Q |
| |
|
|||||||||| || |||| |||| |||||||||| |||||| ||| ||||||||||||||||||| | |||||||| | ||| ||| ||||| |
|
|
| T |
36003738 |
attccaacaagttgcatattaacttcaaatgggtatctccgattcaattttttcaaaacatcttcaacaatgtccttaatgaaatttgattcaatcctac |
36003837 |
T |
|
| Q |
820 |
catatgaa |
827 |
Q |
| |
|
|||||||| |
|
|
| T |
36003838 |
catatgaa |
36003845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #29
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 375 - 454
Target Start/End: Original strand, 23498829 - 23498908
Alignment:
| Q |
375 |
ttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaagg |
454 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| ||| || | |||||||| ||||||||||||||||||| |
|
|
| T |
23498829 |
ttgtacctgaactccatcccatagctttttaagcttgctatgactcaagtgaagctctatgagcatttcagcacaaaagg |
23498908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #30
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 624 - 687
Target Start/End: Original strand, 36024736 - 36024799
Alignment:
| Q |
624 |
gtggtctttcctatgccacccatgccccatattccaatgactctaacatcatttgacccaattt |
687 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| | | |||||||||||||||||||||||| |
|
|
| T |
36024736 |
gtggtctttcctatgccgcccatgccccataatcctaggcctctaacatcatttgacccaattt |
36024799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #31
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 693 - 783
Target Start/End: Original strand, 21086975 - 21087065
Alignment:
| Q |
693 |
attgattcaatttgttcgtaatttttctcaattccaacaagccccttaatttcatatgggtatctaagattcagtttccgcaaaacatctt |
783 |
Q |
| |
|
|||||||||||||||| || | ||||| ||||||||||||||||||||||||||| || ||||| ||||||||| |||||||||||| |
|
|
| T |
21086975 |
attgattcaatttgtttacaactgttctctattccaacaagccccttaatttcatattggggtctaaagttcagtttctgcaaaacatctt |
21087065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 292 - 334
Target Start/End: Original strand, 23498713 - 23498755
Alignment:
| Q |
292 |
tgagtgttgattaaaagagaaacaaaacctagttaaacataaa |
334 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| |||||| |
|
|
| T |
23498713 |
tgagtgttgattaaaagagaaactaaacctaattaagcataaa |
23498755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 623 - 661
Target Start/End: Complemental strand, 35768362 - 35768324
Alignment:
| Q |
623 |
ggtggtctttcctatgccacccatgccccatattccaat |
661 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
35768362 |
ggtggtcttccctatgccacccatgccccatatcccaat |
35768324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201 (Bit Score: 198; Significance: 1e-107; HSPs: 3)
Name: scaffold0201
Description:
Target: scaffold0201; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 464 - 836
Target Start/End: Original strand, 12393 - 12768
Alignment:
| Q |
464 |
gtaggatgcatcaggatgaattttttcttcctctaacaatgaagacaaaagtttattgtatgcaacattgaatccatacttgtttgattcatccattaca |
563 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| ||| | |||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
12393 |
gtaggatgcatcaggatgaagattttcttcctctaacaatgaagaaaaaagtttactgtgtataacattgagtccatacttgtttgattcatcccttaca |
12492 |
T |
|
| Q |
564 |
ttgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcctatgccacccatgccccatattccaatga |
663 |
Q |
| |
|
|| ||||| ||| |||||| ||| ||||||||||||| |||||||||| || | || |||||| |||| |||||||||||||||||||||||||| || |
|
|
| T |
12493 |
ttaaggaaacaaccgccttcaaattgggaataaagttttgcatataaagtactcgcaagggtggtttttcgtatgccacccatgccccatattccaagga |
12592 |
T |
|
| Q |
664 |
ctctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagcc---ccttaatttcatatgggtatctaag |
760 |
Q |
| |
|
|||||||||||||||||||||||| | | ||||||||||||| || ||||||||||||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
12593 |
ctctaacatcatttgacccaattttaaactttgattcaatttggtcataatttttctcaactccaacaagcccggccttaatttcatatgggtatttaag |
12692 |
T |
|
| Q |
761 |
attcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaagaggggaa |
836 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||| ||| ||| ||||| |||| |||||||||||| |
|
|
| T |
12693 |
attcagtttccgcaaaacatcttcaacaatatccttaatgaagcgtgattcagtcctagcatacgaaagaggggaa |
12768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #2
Raw Score: 118; E-Value: 9e-60
Query Start/End: Original strand, 13 - 314
Target Start/End: Original strand, 10824 - 11125
Alignment:
| Q |
13 |
gagatgaacaaccatcaagtaagagttcacaaagagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaatctagatatgt |
112 |
Q |
| |
|
||||||||||||||| ||||| ||| ||| ||||||||||||||||| | || |||||||||| |||| ||||||||||||| |||||||||||| |
|
|
| T |
10824 |
gagatgaacaaccattgagtaaaagtacacggagagattttgaatgaatctcggctttaaggctttcaatatttatgcaacctcgtaaatctagataatc |
10923 |
T |
|
| Q |
113 |
aattcgagggagagaaaagatggatggatggagttgacgcaggctttcacatcgacggagatatactctttcaagatttgtagccctagataagtcaggg |
212 |
Q |
| |
|
|| |||||||||||||| |||||||| |||||| ||||||||||||| |||| || |||||||| |||| ||||||||||||||| |||||||| | | |
|
|
| T |
10924 |
aagtcgagggagagaaaggatggatgtatggagctgacgcaggcttttacattgagtgagatatagactttgaagatttgtagccctggataagtctgag |
11023 |
T |
|
| Q |
213 |
atctcaatcagatctttggaggactgaagcataattgatcttagattcacaagattctgtaacaagaaataaacatccatgagtgttgattaaaagagaa |
312 |
Q |
| |
|
| |||||| |||||||| ||| ||||| || | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
11024 |
agctcaatgagatctttagagtttggaagcgaaagaactgttagattcacaagatcctgtaacaagaaataaacaagcatgagtgttgattaaaagagaa |
11123 |
T |
|
| Q |
313 |
ac |
314 |
Q |
| |
|
|| |
|
|
| T |
11124 |
ac |
11125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0201; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 373 - 454
Target Start/End: Original strand, 11200 - 11281
Alignment:
| Q |
373 |
atttgtacctgaactccatcccagagctttttaagcttgctttgatccatggaaagctctacaagcatttcagcacaaaagg |
454 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||||| ||| || ||||||||| ||||||| |||| |||||| |
|
|
| T |
11200 |
atttttacctgaactccttcccagagctttttaagcttgctatgacgcaattgaagctctacgagcattttagcagaaaagg |
11281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 183; Significance: 2e-98; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 183; E-Value: 2e-98
Query Start/End: Original strand, 536 - 834
Target Start/End: Complemental strand, 10792 - 10494
Alignment:
| Q |
536 |
tccatacttgtttgattcatccattacattgaggaagcaatggccttcgaatcgggaataaagtttaccatataaagtcctagaaatggtggtctttcct |
635 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||| | |||| ||||||||| ||||| || ||||||||||||| |
|
|
| T |
10792 |
tccatacttgtttgattcatccattacattgagtaagcaacaaccttcgaattgagaatacattttagcatataaagccctagcaagggtggtctttcct |
10693 |
T |
|
| Q |
636 |
atgccacccatgccccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaattccaacaagcc |
735 |
Q |
| |
|
||||||||||||||||||||||||| |||||| || |||| ||||||||||| || ||||||||||||||||| ||||| |||| |||||||||||| | |
|
|
| T |
10692 |
atgccacccatgccccatattccaaggactctgacttcatgtgacccaattttcagcattgattcaatttgtttataattcttctgaattccaacaagac |
10593 |
T |
|
| Q |
736 |
ccttaatttcatatgggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacatatgaaagagggg |
834 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| |||||||||||||| |||||||||| |
|
|
| T |
10592 |
ccttaatttcatatgggtatctaagattcagtttccgcaaaacatcttcaacaatgtccttaatgaaatctggttcactcctaacataggaaagagggg |
10494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 626 - 827
Target Start/End: Original strand, 16122856 - 16123060
Alignment:
| Q |
626 |
ggtctttcctatgccacccatgccccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaatt |
725 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| | | | | | ||||||| | ||| || ||||| |||||| |
|
|
| T |
16122856 |
ggtctttcctatgccccccatgccccataatccaagcgttctaacatcatttgacccattattcgttaacaattcaatctcttcatattttttttcaatt |
16122955 |
T |
|
| Q |
726 |
ccaacaagccccttaat---ttcatatgggtatctaagattcagtttccgcaaaacatcttcaacaatggctttaatgaagtctgagtcactcctaacat |
822 |
Q |
| |
|
|||||||| ||||| | |||| |||| ||| |||||||||| ||||||||||| ||| ||| | |||||||||||||| ||| ||||||||| |
|
|
| T |
16122956 |
ccaacaagttccttattggcttcaactgggcgtctctgattcagtttttccaaaacatctttaacgatgtccttaatgaagtctgattcaatcctaacat |
16123055 |
T |
|
| Q |
823 |
atgaa |
827 |
Q |
| |
|
||||| |
|
|
| T |
16123056 |
atgaa |
16123060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 626 - 683
Target Start/End: Complemental strand, 16336344 - 16336287
Alignment:
| Q |
626 |
ggtctttcctatgccacccatgccccatattccaatgactctaacatcatttgaccca |
683 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
16336344 |
ggtctttcctatgccccccatgccccataatccaagcgttctaacatcatttgaccca |
16336287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 624 - 733
Target Start/End: Complemental strand, 12895868 - 12895759
Alignment:
| Q |
624 |
gtggtctttcctatgccacccatgccccatattccaatgactctaacatcatttgacccaatttccatcattgattcaatttgttcgtaatttttctcaa |
723 |
Q |
| |
|
||||||||||||||||| ||||||||||| | |||| | | ||||||||||||||||||||| ||| | ||||||| | ||| | ||||| |||| |
|
|
| T |
12895868 |
gtggtctttcctatgccgcccatgccccaaaacccaagggttttaacatcatttgacccaattttcattaacgattcaacctcttcacactttttatcaa |
12895769 |
T |
|
| Q |
724 |
ttccaacaag |
733 |
Q |
| |
|
|||||||||| |
|
|
| T |
12895768 |
ttccaacaag |
12895759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 102
Target Start/End: Complemental strand, 12897603 - 12897546
Alignment:
| Q |
45 |
agagattttgaatgaatgttggatttaaggcttccaatctttatgcaacctcttaaat |
102 |
Q |
| |
|
|||||||||||||||||||| | ||| |||||| |||||||| |||||||| |||||| |
|
|
| T |
12897603 |
agagattttgaatgaatgttagttttcaggctttcaatctttttgcaaccttttaaat |
12897546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University