View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2846_low_16 (Length: 340)
Name: NF2846_low_16
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 30292189 - 30292494
Alignment:
| Q |
18 |
cagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30292189 |
cagtgaaagagctagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaag |
30292288 |
T |
|
| Q |
118 |
ggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatgcttattatgcttgttcgctctaagaagctat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
30292289 |
ggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaacgttttaatgcttattatgcttgtatgctcta--------- |
30292379 |
T |
|
| Q |
218 |
agctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttctactatgaataaattaatcaagaacaagttttgtgc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30292380 |
agctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccactttcctactatgaataaattaatcaagaacaagttttgtgc |
30292479 |
T |
|
| Q |
318 |
cacctcctctctgct |
332 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
30292480 |
cacctcctctctgct |
30292494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 30315689 - 30316003
Alignment:
| Q |
18 |
cagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaag |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30315689 |
cagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaag |
30315788 |
T |
|
| Q |
118 |
ggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg--------cttattatgcttgttcgctctaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| | |||||| ||| ||| ||| |
|
|
| T |
30315789 |
ggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatgttatgcatgtatgctgtaa |
30315888 |
T |
|
| Q |
210 |
gaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacc-tttctactatgaataaattaatcaagaacaa |
308 |
Q |
| |
|
| | |||||||||||||||||||| |||||||||||||||| ||||||| | |||||||||||||||| ||| |||||||||||||||||||||||| || |
|
|
| T |
30315889 |
ggaactatagctcatagtgagcaaagaataaaacggcattatcttgtaattgtaactagagttccaccttttgtactatgaataaattaatcaagaataa |
30315988 |
T |
|
| Q |
309 |
gttttgtgccacctc |
323 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
30315989 |
gttttgtgccacctc |
30316003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 30304823 - 30305136
Alignment:
| Q |
18 |
cagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30304823 |
cagtgaaagagctagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaag |
30304922 |
T |
|
| Q |
118 |
ggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg--------cttattatgcttgttcgctctaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| |||||||| || | | || |
|
|
| T |
30304923 |
ggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatattatgcaagtatgatatat |
30305022 |
T |
|
| Q |
210 |
gaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttctactatgaataaattaatcaagaacaag |
309 |
Q |
| |
|
| |||||||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||| |
|
|
| T |
30305023 |
ggagctatagctaataatgagcgatgaataaaacggcattatcttgtaactataactagagttccacctttctactatgaataactgaatcaagaataag |
30305122 |
T |
|
| Q |
310 |
ttttgtgccacctc |
323 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
30305123 |
ttttgagccacctc |
30305136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 332
Target Start/End: Original strand, 30287155 - 30287471
Alignment:
| Q |
18 |
cagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaag |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30287155 |
cagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaag |
30287254 |
T |
|
| Q |
118 |
ggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg--------cttattatgcttgttcgctctaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| | |||||| ||| ||| ||| |
|
|
| T |
30287255 |
ggaaagggaagaaggtcgaagccagagacaaagggagcctatttcttcaattttgggagctttttaatgagtgatcaaatgttatgcatgtatgctgtaa |
30287354 |
T |
|
| Q |
210 |
gaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttctactatgaataaattaatcaagaacaag |
309 |
Q |
| |
|
| | |||||||||||| |||| || |||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
30287355 |
ggaactatagctcataatgagaaaagaataaaacggcattatcttg------taactagagttcctcctttctactatgaataaattaatcaagaataag |
30287448 |
T |
|
| Q |
310 |
ttttgtgccacctcctctctgct |
332 |
Q |
| |
|
||||||||| ||||||||||||| |
|
|
| T |
30287449 |
ttttgtgcctcctcctctctgct |
30287471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 30300031 - 30300338
Alignment:
| Q |
18 |
cagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaag |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30300031 |
cagtgaaagaggtagcattccctggatcagctcaagatgttgagagtctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaag |
30300130 |
T |
|
| Q |
118 |
ggaaagggaagaaggtcgaagccagagaaaaagggagcctatttcttcaatttcgggaactttttaatg--------cttattatgcttgttcgctctaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| ||| |||||||||| |||| |||||||| |||||||||||| ||| ||| |
|
|
| T |
30300131 |
ggaaagggaagaaggtcgaagccagagacaaagggagcttatatcttcaattttgggagtattttaatgagtgatcaaatattatgcttgtatgctgtaa |
30300230 |
T |
|
| Q |
210 |
gaagctatagctcatagtgagcaatgaataaaacggcattagcttgtaactataactagagttccacctttctactatgaataaattaatcaagaacaag |
309 |
Q |
| |
|
| || ||||||||||||||||| ||||||||||||| || |||| || ||||||||||||||||| || |||||||||||||||||||| ||| |
|
|
| T |
30300231 |
ggagtcatagctcatagtgagcagagaataaaacggcaatatcttg------tatctagagttccacctttccaccatgaataaattaatcaagaataag |
30300324 |
T |
|
| Q |
310 |
ttttgtgccacctc |
323 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
30300325 |
ttttgtgccacctc |
30300338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 46810480 - 46810582
Alignment:
| Q |
18 |
cagtgaaagagctagcattccctggatcagctcaagatgttgagaggctactaaagaatcagagacaatcttactttgcaaatgctcagcctcaacaaag |
117 |
Q |
| |
|
|||| |||||| | |||||||||||||| ||| |||| ||||| |||||| ||||||| || |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46810480 |
cagtaaaagaggttgcattccctggatctgctgaagaggttgataggctaataaagaaccaaagacaatcttactttgcaaatgctcaacctcaacaaag |
46810579 |
T |
|
| Q |
118 |
gga |
120 |
Q |
| |
|
||| |
|
|
| T |
46810580 |
gga |
46810582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University