View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_low_18 (Length: 320)
Name: NF2846_low_18
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_low_18 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 68 - 320
Target Start/End: Original strand, 31206967 - 31207225
Alignment:
| Q |
68 |
gaatgttgttgaagatgatgttgttttcatgatgcagtacgtgagggaaaattattcatttttatagatccatatatccatgttaaaagtaaatatgaag |
167 |
Q |
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| T |
31206967 |
gaatgttgttgaagatgatgttgttttcatgatgcagtacgtgagggaaaattattcatttttatagatccatatatccatgtaaaaagtaaatatgaag |
31207066 |
T |
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| Q |
168 |
aatttaaaa------agaaaaagatgacattttcaataggcccaacataaaggagaccctactaataaagttttgattgaattaggcttccactaaaaat |
261 |
Q |
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| T |
31207067 |
aatttaaaaagaaaaagaaaaagatgacattttcaataggcccaacataaaggagaccctactaataaagttttgattgaattaggcttccactaaaaat |
31207166 |
T |
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| Q |
262 |
aatataattgctatataagggatcttcttacttttatgcttcgtgttactcgtgatatg |
320 |
Q |
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| T |
31207167 |
aatacaattgctatataagggatcttcttacttttatgcttcgtgttactcgtgatatg |
31207225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 173 - 259
Target Start/End: Original strand, 31185985 - 31186071
Alignment:
| Q |
173 |
aaaaagaaaaagatgacattttcaataggcccaacataaaggagaccctactaataaagttttgattgaattaggcttccactaaaa |
259 |
Q |
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| T |
31185985 |
aaaaagaaaaagatgacattttcaacaggcccgacataaagtagaccctactaataaagttgtttttgatttaggcttccactaaaa |
31186071 |
T |
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