View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_low_2 (Length: 653)
Name: NF2846_low_2
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 57 - 636
Target Start/End: Original strand, 42236332 - 42236910
Alignment:
| Q |
57 |
tgaacataacatgatgtgaaatcactttcgaagatcgttcccgaaactatgagagtgagataaaaacaaaaacatatagcaagagacaagtgttgtgtcc |
156 |
Q |
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| T |
42236332 |
tgaacataacatgatgtgaaatcactttcgaagatcgttcccgaaactatgagagtgagataaaaacaaaaacatatagcaagagacaagtgttgtgtcc |
42236431 |
T |
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| Q |
157 |
agaacttccatattttctctcaaactctcaagacccttctccacctttcacaccaactctatatattcacaactcccacttcccactcctatcatcaaca |
256 |
Q |
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| T |
42236432 |
agaactttcatattttctctcaaactctcaagacccttctccacctttcacaccaactctatatattcacaactctcacttcccactcctatcatcaaca |
42236531 |
T |
|
| Q |
257 |
attgcaactgattctatctagcaagctactaatctttgttgttcattgtttcatttcttcatccttttttctactctactttcctacgtgtaatagccat |
356 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
42236532 |
attgcaactgattctatctagcaagctactaatctttgttgttaattgtttcatttcttcatcctttt-tctactctactttcctacgtataatagccat |
42236630 |
T |
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| Q |
357 |
ggctcaagcagtgtcattgtcaacaactacttcacctatgctttccccaaaagcagggtactcggcagaaacacgtaacaagactactgcaccttgcatg |
456 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42236631 |
ggctcaagcagtgtcattgtcaacaactacttcacctatgctttccccaaaagcagggtactcggcagaaacacgtaacaagactactgcaccttgcatg |
42236730 |
T |
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| Q |
457 |
gcctcatttccattaaggaggcaattgccaaagctaggactaggaagggtgagagctcaagctcaagctagtggtgataacaaagacaattctgtggaag |
556 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42236731 |
gcctcatttccattaaggaggcaattgccaaagctaggactaggaagggtgagagctcaagctcaagctagtggtgataacaaagacaattctgtggaag |
42236830 |
T |
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| Q |
557 |
ttcaacatgttaacaaaggtgatcaaggtcatggttccgctgtagagagaaagcctcgtagaggttccatggacatgatt |
636 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42236831 |
ttcaacatgttaacaaaggtgatcaaggtcatggttccgctgtagagagaaagcctcgtagaggttccatggacatgatt |
42236910 |
T |
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