View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_low_20 (Length: 298)
Name: NF2846_low_20
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 93 - 284
Target Start/End: Original strand, 17945827 - 17946021
Alignment:
| Q |
93 |
taaatatccataatgataaatcattgcacaagacatgattaaacatga--aatcatctgagacaaaggacatccaagaaacaatgtctaagatcacgaaa |
190 |
Q |
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| T |
17945827 |
taaaaatccataatgataagtcattgcacaagacagtattaaacatgagaaatcatctgagagaaaggtca-ccaagaaacaatgtccaagatcgcgaag |
17945925 |
T |
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| Q |
191 |
ccatagtcct--cgacctgaattagcctagatcgcgaagccatatacggtcatatctaagtaaaactataacttgctacaataattaggatgattt |
284 |
Q |
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| T |
17945926 |
ccatagtcctttcgacctgaattagccttgatcgcgaagccatatacggtcatatctaagttaaagtataatttgctgcaataattaggatgattt |
17946021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 160
Target Start/End: Original strand, 18106803 - 18106853
Alignment:
| Q |
110 |
aaatcattgcacaagacatgattaaacatgaaatcatctgagacaaaggac |
160 |
Q |
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| T |
18106803 |
aaatcattgcacaagacagtattaaacatgaaatcatctgagagaaaggac |
18106853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 167
Target Start/End: Original strand, 19404717 - 19404786
Alignment:
| Q |
98 |
atccataatgataaatcattgcacaagacatgattaaacatgaaatcatctgagacaaaggacatccaag |
167 |
Q |
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| T |
19404717 |
atccataatgatgagtcattgcacaagacaatattaaacatgaaatcattggggagaaaggacatccaag |
19404786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 284
Target Start/End: Original strand, 19404784 - 19404822
Alignment:
| Q |
246 |
aagtaaaactataacttgctacaataattaggatgattt |
284 |
Q |
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| T |
19404784 |
aagttaaactataacttgctacaataattaggatgattt |
19404822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 146
Target Start/End: Original strand, 19379200 - 19379248
Alignment:
| Q |
98 |
atccataatgataaatcattgcacaagacatgattaaacatgaaatcat |
146 |
Q |
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| T |
19379200 |
atccataatgataagtaattgcacaagacagtattaaacatgaaatcat |
19379248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 18106665 - 18106706
Alignment:
| Q |
1 |
tgtctcacttgaaagatttgaaacaatagtactccttcagtc |
42 |
Q |
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| T |
18106665 |
tgtctcacttgaaagattttaagccatagtactccttcagtc |
18106706 |
T |
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