View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_low_23 (Length: 271)
Name: NF2846_low_23
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 35919695 - 35919434
Alignment:
| Q |
1 |
atgagtgcagctttacactctctttttaacactactgattgtaatttatataagttctgccattcggaatataagtctcacatgaatttcagttgctagt |
100 |
Q |
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| T |
35919695 |
atgagtgcagctttacactctctttttaacactactgattgtaatttatataagttctgccattcggaatataagtctcacatgaatttcagttgctagt |
35919596 |
T |
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| Q |
101 |
aaagaaattaaagcaaaaattgttaattaatatcactaatcattccataaactatgatttgcttaccttaacaggtccggctgctttgagggaattcaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35919595 |
aaagaaattaaagcaaaaattgttaattaatatcactaatcattccataaactatgatttgcttaccttaacaggtccggctgctttgagggaattcaca |
35919496 |
T |
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| Q |
201 |
acagtacttccgaaagtaattcccttattatcggtcaatataactccacatcttgcctttgc |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35919495 |
acagtacttccgaaagtaattcccttattatcggtcaatataactccacatcttgcctttgc |
35919434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 99 - 228
Target Start/End: Original strand, 35556393 - 35556518
Alignment:
| Q |
99 |
gtaaagaaattaaagcaaaaattgttaattaatatcactaatcattccataaactatgatttgcttaccttaacaggtccggctgctttgagggaattca |
198 |
Q |
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| T |
35556393 |
gtaaagaaaataaagcaaagattgttaataa----cactaatcattccataaactatgatttgcttacctcaataggtcctgcagctttgagggaattca |
35556488 |
T |
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| Q |
199 |
caacagtacttccgaaagtaattcccttat |
228 |
Q |
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| T |
35556489 |
cagcagtacttccgaaagtaattcccttat |
35556518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 35925399 - 35925289
Alignment:
| Q |
17 |
actctctttttaacactactgattgtaatttatataagttctgccattcggaatataagtctcacatgaatttcagttgctagtaaagaaattaaagcaa |
116 |
Q |
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|||||||||||||| ||||| |||| ||||||| || |||| | ||| ||||| |||||||||| |||||||||| |||||||||| | ||| || |
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| T |
35925399 |
actctctttttaactctactcattgaaatttatgcaaattcttctattttgaatacaagtctcacaagaatttcagtcaatagtaaagaattcaaaataa |
35925300 |
T |
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| Q |
117 |
aaattgttaat |
127 |
Q |
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| T |
35925299 |
agattgttaat |
35925289 |
T |
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