View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_low_25 (Length: 252)
Name: NF2846_low_25
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 8 - 237
Target Start/End: Complemental strand, 10878392 - 10878165
Alignment:
| Q |
8 |
gacgttggacccgaagagagagagaaagaattaaataaaaagaaaatacaccatataggatttctctaaaaattaatacccaaccttacttttgttcatt |
107 |
Q |
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| T |
10878392 |
gacgttggacccgaagagagagagaaagaattaaataaaaagaaaatac--catataggatttctctaaaaattaatacccaaccttacttttgttcatt |
10878295 |
T |
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| Q |
108 |
cttatatgtaaacatgagaacatattagcgcccttgttaaaaggttcatctctaatgtgnnnnnnnnnctgcctaaactcggatactatataaaacattt |
207 |
Q |
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| T |
10878294 |
cttatatgtaaacatgagaacatattagcgcccttgttaaaaggttcatctctaatgtgtttttttttctgcctagactcggatactatataaaacattt |
10878195 |
T |
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| Q |
208 |
caactaatggccttttttccttaatattac |
237 |
Q |
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| T |
10878194 |
caactaatggccttttttccttaaaattac |
10878165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 10847535 - 10847455
Alignment:
| Q |
67 |
atttctctaaaaattaatacccaaccttacttttgttcattcttatatgtaaacatgagaacatattagcgcccttgttaaaag |
150 |
Q |
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| T |
10847535 |
atttctctaaaaattaatacccaacctcac-tttgttcattcttatgtgtaaacat--taacatattagttcccatgttaaaag |
10847455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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