View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_low_3 (Length: 619)
Name: NF2846_low_3
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_low_3 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 543; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 543; E-Value: 0
Query Start/End: Original strand, 19 - 619
Target Start/End: Original strand, 594596 - 595196
Alignment:
| Q |
19 |
gccaatgccatagaagagacaagtctagtagcttacttgaagtctagttttcaggttgttctgctatgatgcagggtattatgtccgcacattttatcga |
118 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
594596 |
gccactgccatagaagagacaagtctagtagcttacttgaagtctagttttcaggttgttctgctatgatgcagggtattatgtccgcacattttatcga |
594695 |
T |
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| Q |
119 |
attggcagagaaataaatgggattggtcatagatctgaattattgtgtttcaatttttagattattgcttttccgggaaggaaagtaacattttataatg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
594696 |
attggcagagaaataaatgggattggtcatagatctgaattattgtgtttcaatttttagattattgcttttccgggaaggaaagtaacattttataatg |
594795 |
T |
|
| Q |
219 |
atgttgatcannnnnnnnnnnnnnataggtgctactcacaattcaatcaggattgctcgtgtgtatgtagactgtaattacttttatagttttatgagtt |
318 |
Q |
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| T |
594796 |
atgttgatcatttttcttttttttattggtgctactcacaattcaatcaggattgctcgtgtgtatgtagactgtaattacttttatagttttatgagtt |
594895 |
T |
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| Q |
319 |
tagctgaatctttaggtacgattcttcccttgtgaaggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
594896 |
tagctgaatctttaggtacgattcttcccttgtgaaggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaa |
594995 |
T |
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| Q |
419 |
gctttgccgtaagaatcttaaactgtcgatgcaaatgaataatatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatg |
518 |
Q |
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| T |
594996 |
gctttgccgtaagaatcttaaactgtcaatgcaaatgaataatatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatg |
595095 |
T |
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| Q |
519 |
ttttctgaaatgagagtaaagcaagaatattttccaaagttcatcattaatttgcagatttgtacccttgcagttttgcttttacaacttatcacgggtt |
618 |
Q |
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| T |
595096 |
ttttctgaaatgagagtaaagcaagaatattttccaaagttcatcattaatttgcagatttgtaccattgcagttttgcttttacaacttatcacgggtt |
595195 |
T |
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| Q |
619 |
c |
619 |
Q |
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| T |
595196 |
c |
595196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 26946636 - 26946561
Alignment:
| Q |
148 |
tagatctgaattattgtgtttcaatttttagattattgcttttccgggaaggaaagtaacattttataatgatgtt |
223 |
Q |
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| T |
26946636 |
tagatctgaattattgtgtttcattttttagattattgcttttccgggaaggaaagtaacattttataatgatgtt |
26946561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 26946540 - 26946496
Alignment:
| Q |
245 |
aggtgctactcacaattcaatcaggattgctcgtgtgtatgtaga |
289 |
Q |
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| T |
26946540 |
aggtgctactcataattcaatcaggtttgctcaggtgtatgtaga |
26946496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 100; Significance: 4e-49; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 344 - 562
Target Start/End: Complemental strand, 28168972 - 28168753
Alignment:
| Q |
344 |
tcccttgtgaaggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccgtaagaatcttaaactg |
443 |
Q |
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| T |
28168972 |
tcccttgtgaaggtcttcatgatgaacctttctgcaccatttatctgcgagttcttcaaggatccacaggagaaagctctgccgtaagaatcctaaactg |
28168873 |
T |
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| Q |
444 |
tcga-tgcaaatgaataatatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaaatgagagtaaagcaa |
542 |
Q |
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| | | |||| ||| || |||||||||||| |||||||||||||||||||| ||||||| |||||||| ||||||||| ||||||||| | |||||| |
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| T |
28168872 |
ttaaattgaaataaattatttttttcttattgatctttaaggatttgcattctgggattcaggtatatggactatgtttttggaaatgagactgaagcaa |
28168773 |
T |
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| Q |
543 |
gaatattttccaaagttcat |
562 |
Q |
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| T |
28168772 |
gaacattttccaaagttcat |
28168753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 28169979 - 28169915
Alignment:
| Q |
148 |
tagatctgaattattgtgtttcaatttttagattattgcttttccgggaaggaaagtaacatttt |
212 |
Q |
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| T |
28169979 |
tagatctgaattgttgtgttttaatttatagattattgtgtttccgggaaggaaagtaacatttt |
28169915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 344 - 392
Target Start/End: Complemental strand, 27925099 - 27925051
Alignment:
| Q |
344 |
tcccttgtgaaggtcttcatgatgaacctttcgcaaccatttatttgtg |
392 |
Q |
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| T |
27925099 |
tcccttgtgaaggtcttcatgatgaacctttctgcaccatttatctgtg |
27925051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 159 - 223
Target Start/End: Original strand, 1755122 - 1755186
Alignment:
| Q |
159 |
tattgtgtttcaatttttagattattgcttttccgggaaggaaagtaacattttataatgatgtt |
223 |
Q |
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| T |
1755122 |
tattgtgtttcattttttagattattgctattccgggaaggaaagtaacattttataatgatgtt |
1755186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 344 - 562
Target Start/End: Original strand, 22476755 - 22476977
Alignment:
| Q |
344 |
tcccttgtgaaggtcttcatgatgaacctttcgcaaccatttatttgtgggttctttaaggatccgcataagaaagctttgccgtaagaatcttaaactg |
443 |
Q |
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| T |
22476755 |
tcccttgcgcaggttttcatgatgaacctttctgcaccctttatctgtgagttcttcaaggatccacaggagaaagctcttccgtaagaatccttcaccg |
22476854 |
T |
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| Q |
444 |
tcga-tgcaaatgaata---atatttttcttattgttctttaaggatttgcattctaggattcatgtatatgggctatgttttctgaaatgagagtaaag |
539 |
Q |
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| T |
22476855 |
tcaaatttaaataaatatttatgtttttcttattgatctttaagggtttgcattctgggattcaggtatatggactatgtatttggaaatgagactgaag |
22476954 |
T |
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| Q |
540 |
caagaatattttccaaagttcat |
562 |
Q |
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| T |
22476955 |
cacggacattttcgaaagttcat |
22476977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 205
Target Start/End: Original strand, 22475812 - 22475861
Alignment:
| Q |
156 |
aattattgtgtttcaatttttagattattgcttttccgggaaggaaagta |
205 |
Q |
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| T |
22475812 |
aattcttgtgttttcatttttagattattgtgtttccgggaaggaaagta |
22475861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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