View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_low_34 (Length: 238)
Name: NF2846_low_34
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_low_34 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 31207290 - 31207512
Alignment:
| Q |
1 |
attaataataaattatgacgagtattgaccataaacagcaaatagacaaattacgcggttataagaaaatagattaaaccattagaggctgaagatgatt |
100 |
Q |
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| T |
31207290 |
attaataataaattatgacgagtattgaccataaacagcaaatagacaaattacgcggttataagaaaatagattaaaccattagaggctgaagatgatt |
31207389 |
T |
|
| Q |
101 |
tatataattactagctagagaaacttttaatttcagtcaaaacttttataagagagactattaag-nnnnnnnntaaagattataagttagatctaaaaa |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||||||| |
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| T |
31207390 |
tatataattactagctagagaaacttttaatttcagtcaaaacttttataagagagactattaagaaaaaaatataaaaattataagatagatctaaaaa |
31207489 |
T |
|
| Q |
200 |
cctaaataaatgagttagataga |
222 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
31207490 |
cctaaataaatgagttagataga |
31207512 |
T |
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