View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_low_5 (Length: 497)
Name: NF2846_low_5
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 452
Target Start/End: Complemental strand, 49770888 - 49770445
Alignment:
| Q |
15 |
aatataagtcgtgcaaaagaatttactaacaatannnnnnnnactcagagcatctaataagtcgtgcataagaatttatca-------acaatatatttt |
107 |
Q |
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| T |
49770888 |
aatataagtcgtgcaaaagaatttattaacaatatttcttttactcagagcatctaataagtcgtgcataagaatttatcatttatcaacaatatatttt |
49770789 |
T |
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| Q |
108 |
ttatttgactataaatttatctataaattagataagtgtagattgatgtttaatttgtgtggcaatcgttagttgcactctttccatgtatttgaacaaa |
207 |
Q |
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| T |
49770788 |
ttatttgactataaatttatctataaattagataagtgtagattgatgtttaatttgtgtggcaatcgttagttgcactctttccatgtatttgaacaaa |
49770689 |
T |
|
| Q |
208 |
ttgtgtgagatggccaattgaaagcttaccagcttccttgatcaactgatgatattaagttttctaaatcaagactttaactcaacttagacatcaggtc |
307 |
Q |
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| T |
49770688 |
ttgtgtgagatggccaattgaaagcttaccagcttccttgatcaactgatgatattaagttttctaaatcaagactttaactcaacttagacatcaggtc |
49770589 |
T |
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| Q |
308 |
acttcataccaaatacaattatgaccgtacattatctcttcatgattctcagtcatgtctccctaattttctacgacattatagttaatattgctaacaa |
407 |
Q |
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| T |
49770588 |
acttcataccaaatacaattatgaccgtacattatctcttcatgattctcggtcatgtctccct-attttctacgacattatagttaatattgctaacaa |
49770490 |
T |
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| Q |
408 |
ttacacatctatcaactcacacagcagaaaaaattccaatatttt |
452 |
Q |
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| T |
49770489 |
ttacacatctatcaactcacacagcagaaaaaattctaatatttt |
49770445 |
T |
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