View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2846_low_9 (Length: 386)
Name: NF2846_low_9
Description: NF2846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2846_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 3e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 47462258 - 47462438
Alignment:
| Q |
1 |
ggtggtaattgggaagttaggtgtaatgatgctggtgttagagtcataaaagctaatgtggatagtactattgatgaatggctatcatcttctgctactg |
100 |
Q |
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| T |
47462258 |
ggtggtaattgggaagttaggtgtaatgatgctggtgttagaatcataaaagctaatgtggatagtactattgatgaatggctatcatcttctgctactg |
47462357 |
T |
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| Q |
101 |
gatctgatgaggcacagcttatagcttgggatgatatgcctcatgaccctagcacatggtcaccttttagaattcaggtac |
181 |
Q |
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| T |
47462358 |
gatctgatgaggcacagcttatagcttgggatgatatgcctcatgaccctagcacatggtcaccttttagaattcaggtac |
47462438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 218 - 371
Target Start/End: Original strand, 47462475 - 47462621
Alignment:
| Q |
218 |
gtatcaaataagtctccacaattttaa---gtatcaatcatatgagaagaaaacttttgttgcctaaccaaattaaaggaggaaaacaatctattttctc |
314 |
Q |
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| T |
47462475 |
gtatcaaataagtctccacaattttaattagtatcaatcatatgagaagaaaacttttcttgcctaaccaaa-----ggaggaaaacaatctattttctc |
47462569 |
T |
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| Q |
315 |
tcttaccaacatgcatcccaaattaaaatgggatcggatcttcttccgtgaatggag |
371 |
Q |
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| T |
47462570 |
tcttaccaacatgcatccc-----aaaatgggatcggatcttcttccgtgaatggag |
47462621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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