View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2847_high_1 (Length: 666)
Name: NF2847_high_1
Description: NF2847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2847_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 188 - 644
Target Start/End: Original strand, 2443331 - 2443799
Alignment:
| Q |
188 |
ccaggacagctcacatccgaaccccaaagacaagacagcaaccaaccttaaaaagcagttgacgcatgtattttcaatctactcaaactctaatgcaaag |
287 |
Q |
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| T |
2443331 |
ccaggacagctcacatccgaaccccaaagacaagacagcaaccaaccttaaaaagcagttgacgcatgtattttcaatctactcaaactctaatgcaaag |
2443430 |
T |
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| Q |
288 |
ataacacttttatcccatc------------aatctccctcacttggttgcatcaaatcctttcgttccgcaccctgcaaatcaccaaaagcttggaatg |
375 |
Q |
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| T |
2443431 |
ataacacttttatcccatcaattacttcatcaatctccctcacttggttgcatcaaatcctttcgttcctcaccctgcaaatcaccaaaagcttggaatg |
2443530 |
T |
|
| Q |
376 |
ccaaatcaaccacgcacctttcagattttcttctcattaacctcaaccgaccaacaagaaaagtgcacaaataaattcggggagtaacaaaattaaaatc |
475 |
Q |
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| T |
2443531 |
ccaaatcaaccacgcacctttcagattttcttctcattaacctcaaccgaccaacaagaaaagtgcacaaataaattcggggagtaacaaaattaaaatc |
2443630 |
T |
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| Q |
476 |
catccatctcaaaacgttttgacacaccatatcttccattttgccacacaacaaacaatttaagaatgcgttgtgatccaaaacgtttccaaatgcaaga |
575 |
Q |
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| T |
2443631 |
catccatctcaaaacgttttgaaacaccatatcttccattttgccacacaacagacaatttaagaatgcgttgtgatccaaaacgtttccaaatgcaaga |
2443730 |
T |
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| Q |
576 |
tttgaacacgttggaatacagtctagaagaagagtccaagaaaaaaccacaacttttaaccgagccggg |
644 |
Q |
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| T |
2443731 |
tttgaacacgttggaatacagtctagaagaagagtccaagaaaaaaccacaacttttgaccgagccggg |
2443799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 547 - 643
Target Start/End: Original strand, 12220501 - 12220597
Alignment:
| Q |
547 |
tgtgatccaaaacgtttccaaatgcaagatttgaacacgttggaatacagtctagaagaagagtccaagaaaaaaccacaacttttaaccgagccgg |
643 |
Q |
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|||||||||||||||||||||||||||||||| | | |||||||| | |||||||||||||||||||||||| | ||||||||| |||||||||| |
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| T |
12220501 |
tgtgatccaaaacgtttccaaatgcaagatttaaccgagttggaatttaatctagaagaagagtccaagaaaaagctacaacttttgaccgagccgg |
12220597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 15 - 105
Target Start/End: Complemental strand, 9603490 - 9603400
Alignment:
| Q |
15 |
cacagacctacacaatgccatatataagcgacatcactattagcggaacacagcctaccattatcaactcaagtaccgaaacagaaatgaa |
105 |
Q |
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| T |
9603490 |
cacagacctagacaatgcagtatataagcgacatcactattatctgaacatagcctaccgccaataactcaagcaccgaaacagaaatgaa |
9603400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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