View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2847_high_2 (Length: 449)

Name: NF2847_high_2
Description: NF2847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2847_high_2
NF2847_high_2
[»] chr6 (17 HSPs)
chr6 (165-437)||(26300331-26300603)
chr6 (8-165)||(33746711-33746868)
chr6 (8-166)||(16766287-16766445)
chr6 (8-166)||(16368819-16368977)
chr6 (8-166)||(6851247-6851405)
chr6 (8-138)||(20582827-20582957)
chr6 (8-165)||(11242291-11242448)
chr6 (85-164)||(16766556-16766635)
chr6 (88-165)||(29846978-29847055)
chr6 (8-169)||(11246270-11246431)
chr6 (82-162)||(20582638-20582718)
chr6 (99-167)||(33746961-33747029)
chr6 (98-165)||(16368640-16368707)
chr6 (98-176)||(29846777-29846855)
chr6 (98-165)||(6851549-6851615)
chr6 (8-47)||(29846935-29846974)
chr6 (96-146)||(12612291-12612341)
[»] chr7 (9 HSPs)
chr7 (8-176)||(24825779-24825947)
chr7 (8-165)||(32793002-32793159)
chr7 (11-165)||(11324270-11324424)
chr7 (16-165)||(37873416-37873565)
chr7 (16-166)||(37879077-37879227)
chr7 (79-165)||(24825558-24825644)
chr7 (79-164)||(32792783-32792868)
chr7 (97-169)||(9402555-9402627)
chr7 (98-167)||(11324050-11324119)
[»] scaffold0428 (2 HSPs)
scaffold0428 (8-169)||(7485-7646)
scaffold0428 (79-163)||(7765-7849)
[»] chr8 (4 HSPs)
chr8 (8-165)||(3068773-3068930)
chr8 (8-169)||(3305838-3305999)
chr8 (79-165)||(3069064-3069150)
chr8 (79-165)||(3305618-3305704)
[»] chr4 (15 HSPs)
chr4 (8-165)||(41315898-41316055)
chr4 (8-163)||(15874229-15874384)
chr4 (8-166)||(20878691-20878849)
chr4 (8-166)||(23254596-23254754)
chr4 (8-165)||(42305904-42306060)
chr4 (8-170)||(38484455-38484618)
chr4 (8-166)||(55893212-55893367)
chr4 (80-174)||(42306195-42306289)
chr4 (79-169)||(23254372-23254462)
chr4 (83-170)||(15874522-15874609)
chr4 (84-165)||(55893466-55893547)
chr4 (82-169)||(41316192-41316278)
chr4 (96-164)||(38485175-38485243)
chr4 (120-164)||(20878988-20879032)
chr4 (96-146)||(2180504-2180554)
[»] chr3 (13 HSPs)
chr3 (8-166)||(33794432-33794589)
chr3 (8-166)||(14783733-14783891)
chr3 (8-164)||(40560678-40560834)
chr3 (8-165)||(31724352-31724509)
chr3 (8-169)||(5047999-5048160)
chr3 (9-165)||(20124654-20124811)
chr3 (11-156)||(2439992-2440137)
chr3 (79-170)||(2439764-2439855)
chr3 (79-165)||(5048294-5048380)
chr3 (96-166)||(14784027-14784098)
chr3 (98-165)||(31724657-31724724)
chr3 (83-166)||(40560472-40560554)
chr3 (83-164)||(33794727-33794806)
[»] chr5 (6 HSPs)
chr5 (8-166)||(31155561-31155719)
chr5 (8-164)||(39761533-39761689)
chr5 (8-164)||(31155893-31156049)
chr5 (79-167)||(39760421-39760509)
chr5 (79-166)||(31156183-31156270)
chr5 (104-165)||(31155369-31155430)
[»] chr1 (11 HSPs)
chr1 (8-173)||(52331626-52331791)
chr1 (8-167)||(7709921-7710080)
chr1 (8-165)||(34492448-34492605)
chr1 (8-174)||(37646876-37647042)
chr1 (28-163)||(13618340-13618475)
chr1 (79-165)||(52331406-52331492)
chr1 (79-164)||(7709700-7709785)
chr1 (44-163)||(13618539-13618658)
chr1 (99-169)||(34492232-34492302)
chr1 (98-165)||(13618255-13618322)
chr1 (132-165)||(37646741-37646774)
[»] scaffold0291 (2 HSPs)
scaffold0291 (8-175)||(11274-11441)
scaffold0291 (8-165)||(10953-11110)
[»] chr2 (6 HSPs)
chr2 (8-165)||(12414056-12414213)
chr2 (8-165)||(12426116-12426273)
chr2 (8-165)||(4731902-4732059)
chr2 (79-170)||(4731709-4731800)
chr2 (98-167)||(12413835-12413904)
chr2 (98-167)||(12425895-12425964)
[»] scaffold0184 (2 HSPs)
scaffold0184 (20-164)||(7183-7328)
scaffold0184 (79-165)||(7017-7103)
[»] scaffold1408 (1 HSPs)
scaffold1408 (49-169)||(1739-1859)
[»] scaffold0032 (2 HSPs)
scaffold0032 (79-171)||(33206-33298)
scaffold0032 (12-125)||(32959-33074)
[»] scaffold0021 (1 HSPs)
scaffold0021 (96-146)||(12200-12250)


Alignment Details
Target: chr6 (Bit Score: 265; Significance: 1e-148; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 165 - 437
Target Start/End: Original strand, 26300331 - 26300603
Alignment:
Q  165 taaaataaaatatcagtatatgagtaagagtagtgatgaaacatagagagatgcttaccttgtgagcttgctctttatataaggttgaggagaccgttat 264  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26300331 taaaataaaatatcagtatatgagtaagagtagtgatgaaacatagagagatgcttaccttgtgagcttgctctttatataaggttgaggagaccgttat 26300430  T
Q  265 gtgataatggtgagaaagccgttatgaaattggcccataaatgtggtaaatgaccattgttgggacataatgatgtgaagagggtccaaagtgagaaaga 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26300431 gtgataatggtgagaaagccgttatgaaattggcccataaatgtggtaaatgaccattgttgggacataatgatgtgaagagggtccaaagtgagaaaga 26300530  T
Q  365 gattctactcacttgatcatgtgtagaactgagccttaatttgagggtgttaagcttttggctagtctagaat 437  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    
T  26300531 gattctactcacttgatcatgtgtagaattgagccttaatttgagggtgttaagcttttggctagtccagaat 26300603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 33746868 - 33746711
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       || |||| |||||||||||||||||||||    
T  33746868 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcagggattgatttctgaatttttatttt 33746769  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  33746768 acatggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 33746711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 16766445 - 16766287
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  16766445 cacgtaggcattttggtgacttgccatgacttaaatgggcccaagggtatttttaaaagacagatttttttgcggggactgatttctgaatttttatttt 16766346  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 166  Q
    |||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  16766345 acaaagaccaaaacttaaatgggtcatatttgcagggacgagtgcaatatttaagccta 16766287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 16368819 - 16368977
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |       |  |||||||||||||||||||| |||||    
T  16368819 cacgtaggcattttggtgacttgtcatgatttaaatgggcccaggggtatttttaaaagacaaatttttttgtagggactgatttctgaattttcatttt 16368918  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 166  Q
    ||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  16368919 acacggaccaaaacttaaacggatcatatttgcagggacgagtgcaatatttaagccta 16368977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 6851405 - 6851247
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||        | ||| |||||||||||||||||||||||    
T  6851405 cacgtaagcattttggtgacttgtcatgacttaaatggatccaggggtatttttaaaagacagttttttttgtgggaactgatttctgaatttttatttt 6851306  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 166  Q
    |||| |||||||||||||||||  |||||||||| ||||||||||||||||||||||||    
T  6851305 acaaagaccaaaacttaaacggatcatatttgcatggacgagtgcaatatttaagccta 6851247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 8 - 138
Target Start/End: Original strand, 20582827 - 20582957
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||       |||||| ||||||||| ||||||||||||    
T  20582827 cacgtaggcattttgatgacttgtcatgacttaaatgggcccagggatatttttaaaagacagatttttttgcggggtctgatttctaaatttttatttt 20582926  T
Q  108 acaaggaccaaaacttaaacgggccatattt 138  Q
    |||||||||||||||||||||||||||||||    
T  20582927 acaaggaccaaaacttaaacgggccatattt 20582957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 11242448 - 11242291
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    ||||||||||||||||  || |||||||||||||||||| ||| | ||||||||||||||||||       |||||||||||||||||||||||||||||    
T  11242448 cacgtaggcattttggtcacctgtcatgacttaaatgggtccatgagtatttttaaaagacagatttttttgcggggactgatttctgaatttttatttt 11242349  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    ||||||| ||||||||||| | |||||||||   ||||||||||||||||||||||||    
T  11242348 acaaggatcaaaacttaaatgagccatatttatggggacgagtgcaatatttaagcct 11242291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 85 - 164
Target Start/End: Original strand, 16766556 - 16766635
Alignment:
Q  85 actgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 164  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  16766556 actgatttctgaatttttattttacaaggaccaaaacataaacgggccatatttgcagggacgattgcaatatttaagcc 16766635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 88 - 165
Target Start/End: Original strand, 29846978 - 29847055
Alignment:
Q  88 gatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846978 gatttctgaatttttattttacagagaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 29847055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 11246270 - 11246431
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    ||||||||||||||||  || | ||||||||||||| |  | |||||||||| ||||||||| |       | |||||||||||| ||||||||||||||    
T  11246270 cacgtaggcattttggtaacctttcatgacttaaatagatctaggggtatttataaaagacaaatttttttgtggggactgatttgtgaatttttatttt 11246369  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaa 169  Q
    ||||||||  |||||||||| |  |||||||||||||| |||||||||||||||||||||||    
T  11246370 acaaggactcaaacttaaacagatcatatttgcagggatgagtgcaatatttaagcctaaaa 11246431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 82 - 162
Target Start/End: Complemental strand, 20582718 - 20582638
Alignment:
Q  82 gggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaag 162  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||    
T  20582718 gggactgatttctgaatttttattttacaaggaccaaaacttaaacggactatatttgtagggacgagtgcaatatttaag 20582638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 33746961 - 33747029
Alignment:
Q  99 ttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaa 167  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33746961 tttttttttacaaggacgaaaacttaaacgggccatatttgcagggacgggtgcaatatttaagcctaa 33747029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 16368707 - 16368640
Alignment:
Q  98 tttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    ||||| ||||||| |||| |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  16368707 ttttttttttacagggacgaaaacttaaacatgccatatttgcagggacgagtgcaatatttaagcct 16368640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 29846855 - 29846777
Alignment:
Q  98 tttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaataaaata 176  Q
    ||||| ||||||| |||| |||||||||| |  |||||||||||||||||||||||||||||||||||  |||||||||    
T  29846855 ttttttttttacagggacgaaaacttaaatgacccatatttgcagggacgagtgcaatatttaagcctttaataaaata 29846777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 6851549 - 6851615
Alignment:
Q  98 tttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    ||||| ||||||| | || |||||||||||| ||||||||||||| |||| |||||||||||||||||    
T  6851549 ttttttttttacaggaacgaaaacttaaacgagccatatttgcagagacg-gtgcaatatttaagcct 6851615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 47
Target Start/End: Original strand, 29846935 - 29846974
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggc 47  Q
    |||||||||| ||||| |||||||||||||||||||||||    
T  29846935 cacgtaggcaatttggtgacttgtcatgacttaaatgggc 29846974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 12612291 - 12612341
Alignment:
Q  96 aatttttattttacaaggaccaaaacttaaacgggccatatttgcagggac 146  Q
    ||||||||||||||| |||| |||||| ||||| | |||||||||||||||    
T  12612291 aatttttattttacagggactaaaactaaaacgaggcatatttgcagggac 12612341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 5e-66; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 8 - 176
Target Start/End: Original strand, 24825779 - 24825947
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  24825779 cacgtaggcattttggtgacttgttatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttatttt 24825878  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaataaaata 176  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  24825879 tcaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccaaaaaaaaaata 24825947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 32793002 - 32793159
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||       || ||||||||||||||||||||||||||    
T  32793002 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcagggactgatttctgaatttttatttt 32793101  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32793102 acaaggaccaaaacttaaacgggctatatttgcagggacgagtgcaatatttaagcct 32793159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 11 - 165
Target Start/End: Original strand, 11324270 - 11324424
Alignment:
Q  11 gtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttattttaca 110  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||       |||| || ||||||||||||||||||||||||    
T  11324270 gtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcggagattgatttctgaatttttattttaca 11324369  T
Q  111 aggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  11324370 aggaccaaaacttaaacgagccatatttgcagggacgaatgcaatatttaagcct 11324424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 37873565 - 37873416
Alignment:
Q  16 cattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttattttacaaggac 115  Q
    |||||||| ||| |||||| | ||||||||||||||||||||||||||||||||||       || ||||||||||||||||||||||||||||||||||    
T  37873565 cattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaattttttgcagggactgatttctgaatttttattttacaaggac 37873466  T
Q  116 caaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37873465 caaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 37873416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 37879077 - 37879227
Alignment:
Q  16 cattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttattttacaaggac 115  Q
    |||||||| ||| |||||| | ||||||||||||||||||||||||||||||||||       || |||| |||||||||||||||||||||||||||||    
T  37879077 cattttggtgacctgtcatcaattaaatgggcccaggggtatttttaaaagacagaattttttgcagggattgatttctgaatttttattttacaaggac 37879176  T
Q  116 caaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 166  Q
    ||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  37879177 caaaacttaaacgggtcatatttgcagggacgagtacaatatttaagccta 37879227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 24825644 - 24825558
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24825644 gcggagactgatttctgaatttttattttacaaggaccaaaacttaaacgagccatatttgcagggacgagtgcaatatttaagcct 24825558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 32792868 - 32792783
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 164  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32792868 gcggggattgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaagcc 32792783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 9402627 - 9402555
Alignment:
Q  97 atttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaa 169  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  9402627 atttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaaacctaaaa 9402555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 11324119 - 11324050
Alignment:
Q  98 tttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaa 167  Q
    ||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  11324119 ttttttttttacagggacgaaaacttaatcgggccatatttgcagggacgagtgcaatatttaaacctaa 11324050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 7646 - 7485
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||    
T  7646 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcggggattgatttctgaatttttatttt 7547  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaa 169  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7546 agaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcataaaa 7485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 79 - 163
Target Start/End: Original strand, 7765 - 7849
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7765 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgtgccatatttgcagggacgagtgcaatatttaagc 7849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 3068930 - 3068773
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  3068930 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttatttt 3068831  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3068830 acaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 3068773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 3305838 - 3305999
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||||| ||||||||||||    
T  3305838 cacgtaggcattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagatttttttgcggggactgatttctaaatttttatttt 3305937  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaa 169  Q
    |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3305938 acaaggaagaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaa 3305999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 3069064 - 3069150
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3069064 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 3069150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 3305704 - 3305618
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  3305704 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagttcaatatttaagcct 3305618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 3e-64; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 41316055 - 41315898
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  41316055 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttatttt 41315956  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||    
T  41315955 acaaggaccaaaacttaaacggaccatatttgcagggacgaatgcaatatttaagcct 41315898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 15874384 - 15874229
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||| |       |||||||||||||||||||||||||||||    
T  15874384 cacgtaggcattttggtgacttgtcatgccttaaatgcgcccaggggtatttttaaaagacaaatttttttgcggggactgatttctgaatttttatttt 15874285  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15874284 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagc 15874229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 20878849 - 20878691
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||    
T  20878849 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagatttttttgcggggactgatttctgaatttttatttt 20878750  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 166  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  20878749 acaaggaccaaaacttaaacgggccatatttgcagggatgagtggaatgtttaagccta 20878691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 23254596 - 23254754
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||| ||||||| |||||||||||||||||||| ||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||    
T  23254596 cacgtaggtattttggtgacttgtcatgacttaaatgagcccaggagtatttttaaaagacagatttttttgcggggactgatttctgaatttttatttt 23254695  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 166  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23254696 acaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 23254754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 42306060 - 42305904
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  42306060 cacgtaggcattttggtgacttgtcatgacttaaatgggac-aggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttatttt 42305962  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    || ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42305961 acgaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 42305904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 38484618 - 38484455
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnn-gcggggactgatttctgaatttttattt 106  Q
    |||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||        ||   |||||||||||||||||||||||    
T  38484618 cacgtaggcattttggtgacttgtcatgacttaaatggacccagggatatttttaaaagacagattttttttgcaaagactgatttctgaatttttattt 38484519  T
Q  107 tacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaat 170  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  38484518 tacaaggaccaaaacttaaacgggccatatttacagagacgagtgcaatatttaagcctaaaat 38484455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 55893367 - 55893212
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||       |||||||   |||||||||||||||||||    
T  55893367 cacgtaggcattttggtgacttgtcatgacttaaatgagcccagggctatttttaaaagacagatttttttgcgggga---atttctgaatttttatttt 55893271  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 166  Q
    ||||  ||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  55893270 acaataaccaaaacttaaacgggccatatttgcagagacgggtgcaatatttaagccta 55893212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 80 - 174
Target Start/End: Original strand, 42306195 - 42306289
Alignment:
Q  80 cggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaataaaa 174  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  42306195 cggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttggagggacgagttcaatatttaagcctaaaataaaa 42306289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 23254462 - 23254372
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaa 169  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  23254462 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccaaaaa 23254372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 83 - 170
Target Start/End: Original strand, 15874522 - 15874609
Alignment:
Q  83 ggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaat 170  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||| ||||    
T  15874522 ggactgatttctgaatttttattttacaaagaccaaaacttaaacggggcatatttgcagggacgagtgcaatacttaagccttaaat 15874609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 55893466 - 55893547
Alignment:
Q  84 gactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  55893466 gactgatttctgaatttttatttttcaaggaccaaaacttaaacgagccatatttacagggacgagtgcaatatttaagcct 55893547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 82 - 169
Target Start/End: Original strand, 41316192 - 41316278
Alignment:
Q  82 gggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaa 169  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  41316192 gggacggatttctgaatttt-attttacaaggaccaaaacttaaacgaaccatatttgcagggacgagtgcaatatttaagcctaaaa 41316278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 38485175 - 38485243
Alignment:
Q  96 aatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 164  Q
    ||||||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  38485175 aattttttttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagcc 38485243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 120 - 164
Target Start/End: Original strand, 20878988 - 20879032
Alignment:
Q  120 acttaaacgggccatatttgcagggacgagtgcaatatttaagcc 164  Q
    |||||||||||||||||||||||||||||||| ||||||||||||    
T  20878988 acttaaacgggccatatttgcagggacgagtgtaatatttaagcc 20879032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Original strand, 2180504 - 2180554
Alignment:
Q  96 aatttttattttacaaggaccaaaacttaaacgggccatatttgcagggac 146  Q
    ||||||| |||||||||||| |||||  ||||| |||||||||||||||||    
T  2180504 aattttttttttacaaggactaaaaccaaaacgtgccatatttgcagggac 2180554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 3e-64; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 33794589 - 33794432
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  33794589 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttt-gcggggactgatttctgaatttttatttt 33794491  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 166  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33794490 acaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagccta 33794432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 14783891 - 14783733
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||| |       |||||||||||||||||||||||||||||    
T  14783891 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggcatttttaaacgacaaatttttttgcggggactgatttctgaatttttatttt 14783792  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 166  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14783791 acaaggaccaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagccta 14783733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 40560678 - 40560834
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||| ||||| | || ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  40560678 cacgtaggtattttagtgatttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttatttt 40560777  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 164  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  40560778 acaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcc 40560834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 31724509 - 31724352
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||| |       |||||||||||||||||||||||||||||    
T  31724509 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaagggtatttttaaaagacaaatttttttgcggggactgatttctgaatttttatttt 31724410  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  31724409 acaaggaccaaaatttaaacgggccatatttgcatggacgagtgcaatatttaagcct 31724352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 5048160 - 5047999
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||| |||       |||||||||||||||||||||||||||||    
T  5048160 cacgtaggcattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagatagattttttcgcggggactgatttctgaatttttatttt 5048061  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaa 169  Q
    ||||| |||||||||||||||| |||||||| || |||||||||||||||||||||||||||    
T  5048060 acaagaaccaaaacttaaacggaccatatttacaaggacgagtgcaatatttaagcctaaaa 5047999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 20124811 - 20124654
Alignment:
Q  9 acgtaggcattttggagacttgtcatgacttaaatgggccc-aggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    ||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||||||| |       |||||||||||||||||||||||||||||    
T  20124811 acgtaggcattttggtgacttgtcattacttaaatgggccccaggggtatttttaaaagacatatttttttgcggggactgatttctgaatttttatttt 20124712  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||    
T  20124711 acaaagaccaaaacttaaacggaccatatttacagggacgagtgcaatatttaagcct 20124654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 11 - 156
Target Start/End: Original strand, 2439992 - 2440137
Alignment:
Q  11 gtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttattttaca 110  Q
    ||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||    
T  2439992 gtaggcattttggtgacttgtcattacttaaatggacccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttattttaca 2440091  T
Q  111 aggaccaaaacttaaacgggccatatttgcagggacgagtgcaata 156  Q
    || |||||||||||||||| |||||||| || ||||||||||||||    
T  2440092 agaaccaaaacttaaacggaccatatttacaaggacgagtgcaata 2440137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 2439855 - 2439764
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaat 170  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2439855 gcggggattgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaat 2439764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 79 - 165
Target Start/End: Original strand, 5048294 - 5048380
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5048294 gcggggactgatttctgaatttttattttacgaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 5048380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 96 - 166
Target Start/End: Original strand, 14784027 - 14784098
Alignment:
Q  96 aatttttatttt-acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 166  Q
    |||||||||||| ||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  14784027 aatttttatttttacagggacgaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccta 14784098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 165
Target Start/End: Original strand, 31724657 - 31724724
Alignment:
Q  98 tttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||||| |||||  |||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31724657 tttttaatttaccgggacaaaaacttaaacgggccatatttgcaaggacgagtgcaatatttaagcct 31724724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 40560554 - 40560472
Alignment:
Q  83 ggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 166  Q
    |||||||||||||||||||| ||||||| |||| |||| | ||||| | |||||||||||||||| ||||||||||||||||||    
T  40560554 ggactgatttctgaattttt-ttttacagggactaaaattaaaacgaggcatatttgcagggacgggtgcaatatttaagccta 40560472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 33794727 - 33794806
Alignment:
Q  83 ggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 164  Q
    |||||||||||||| |||||  |||||| |||| |||| | ||||| | |||||||||||||||||||||||||||||||||    
T  33794727 ggactgatttctgatttttt--tttacagggactaaaattaaaacgaggcatatttgcagggacgagtgcaatatttaagcc 33794806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 31155561 - 31155719
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |       |||||||||||||||||||||||||||||    
T  31155561 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaagggtatttttaaaagacatatttttttgcggggactgatttctgaatttttatttt 31155660  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 166  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  31155661 acaaggaccaaaacttaaacgggtcatatttgcagggacgagtgcaatatttaagccta 31155719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 39761533 - 39761689
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||       || ||||||||||||||||||||||||||    
T  39761533 cacgtaagcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagatttttttgcagggactgatttctgaatttttatttt 39761632  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 164  Q
    ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  39761633 acaaggaccaaaacttaaacgtgccatatttgcagggacaagtgcaatatttaagcc 39761689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 8 - 164
Target Start/End: Complemental strand, 31156049 - 31155893
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |       ||| |||||||||||||||||||||||||    
T  31156049 cacgtaagcattttggtgacttgtcataacttaaatgggcccaggggtatttttaaaagacatatttttttgcgaggactgatttctgaatttttatttt 31155950  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 164  Q
    ||||||||||||||||||||| | ||||||||||||||||||  |||||||||||||    
T  31155949 acaaggaccaaaacttaaacgtgtcatatttgcagggacgagatcaatatttaagcc 31155893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 79 - 167
Target Start/End: Complemental strand, 39760509 - 39760421
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaa 167  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39760509 gcggggactaatttctgaatttttattttacaaggaccaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctaa 39760421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 79 - 166
Target Start/End: Original strand, 31156183 - 31156270
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccta 166  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |||||||||||||||||    
T  31156183 gcggggactgatttctgaatttttattttacaagaaccaaaacttaaacggaccatatttgtagggacgaatgcaatatttaagccta 31156270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 104 - 165
Target Start/End: Complemental strand, 31155430 - 31155369
Alignment:
Q  104 ttttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||||    
T  31155430 ttttacaaggacaaaaaattaaacgggccatatttgcatggacgagtacaatatttaagcct 31155369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 8e-62; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 52331626 - 52331791
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| | |       |||||||||||||||| ||||||||||||    
T  52331626 cacgtaggcattttgatgacttgtcatgacttaaatgggcccaggggtatttttaaaagataaatttttttgcggggactgatttctaaatttttatttt 52331725  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaataaa 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52331726 acaaggatcaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaataaa 52331791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 7709921 - 7710080
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||       ||  |||||||||||||||||||||||||    
T  7709921 cacgtaggcattttggtgacttgtcatgacttaaatgggcacaggggtatttttaaaagacagatttttttgcaaggactgatttctgaatttttatttt 7710020  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaa 167  Q
    |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7710021 acaaggacgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcctaa 7710080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 34492448 - 34492605
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||       ||||| |||||| ||||||||||||||||    
T  34492448 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagatagatttttttgcgggaactgatgtctgaatttttatttt 34492547  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||||||||||||||||||| | ||||||||||||| |||||||||||||||||||||    
T  34492548 acaaggaccaaaacttaaacagaccatatttgcaggaacgagtgcaatatttaagcct 34492605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 8 - 174
Target Start/End: Original strand, 37646876 - 37647042
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||  |||||||||| ||||||||||||||    
T  37646876 cacgtaggcattttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgcacggactgatttttgaatttttatttt 37646975  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaataaaa 174  Q
    ||||||||||||||||||||| |||||||||||||  |||| ||||||||||||||| ||| |||||    
T  37646976 acaaggaccaaaacttaaacgagccatatttgcagaaacgaatgcaatatttaagccaaaagtaaaa 37647042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 28 - 163
Target Start/End: Original strand, 13618340 - 13618475
Alignment:
Q  28 ttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaac 127  Q
    ||||||||||||||||||||||||||||||||||||||||||||       || |||| |||||||||| ||||||||||||||||||||||||||||||    
T  13618340 ttgtcatgacttaaatgggcccaggggtatttttaaaagacagatttttttgctgggattgatttctgattttttattttacaaggaccaaaacttaaac 13618439  T
Q  128 gggccatatttgcagggacgagtgcaatatttaagc 163  Q
    ||||||||||||||||||||| ||||||||||||||    
T  13618440 gggccatatttgcagggacgaatgcaatatttaagc 13618475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 52331492 - 52331406
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52331492 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 52331406  T

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Target: chr1; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 7709785 - 7709700
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 164  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  7709785 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagttcaatatttaagcc 7709700  T

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Target: chr1; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 44 - 163
Target Start/End: Original strand, 13618539 - 13618658
Alignment:
Q  44 gggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagg 143  Q
    ||||||||||||||||||||||||||||       || |||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  13618539 gggcccaggggtatttttaaaagacagatttttttgctgggattgatttctgattttttattttacaaggaccaaaacttaaacggaccatatttgcagg 13618638  T
Q  144 gacgagtgcaatatttaagc 163  Q
    ||||| ||||||||||||||    
T  13618639 gacgaatgcaatatttaagc 13618658  T

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Target: chr1; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 34492302 - 34492232
Alignment:
Q  99 ttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaa 169  Q
    |||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  34492302 tttttttttacacggacgaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagccaaaaa 34492232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 13618322 - 13618255
Alignment:
Q  98 tttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    ||||| ||||||| |||| |||||||||||||| |||||||||||||| |||||||||||||||||||    
T  13618322 ttttttttttacagggactaaaacttaaacgggtcatatttgcagggaagagtgcaatatttaagcct 13618255  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 165
Target Start/End: Complemental strand, 37646774 - 37646741
Alignment:
Q  132 catatttgcagggacgagtgcaatatttaagcct 165  Q
    ||||||||||||||||| ||||||||||||||||    
T  37646774 catatttgcagggacgaatgcaatatttaagcct 37646741  T

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Target: scaffold0291 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 8 - 175
Target Start/End: Original strand, 11274 - 11441
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||  |||||||||| || |||||||||||||||||||||||||||||||||       ||| |||||||||||||||||||||||||    
T  11274 cacgtaggcattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagatttttttgcgaggactgatttctgaatttttatttt 11373  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaataaaat 175  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  11374 acaaggaccaaaacttaaacgggccatatttacagggacgagtgcaatatttaagcctaatataaaat 11441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 11110 - 10953
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||  |||||||||| || |||||||||||||||||||||||||||||||||       ||| |||||||||||||||||||||||||    
T  11110 cacgtaggcattttgatgacttgtcataacctaaatgggcccaggggtatttttaaaagacagatttttttgcgaggactgatttctgaatttttatttt 11011  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11010 acaaggaccaaaatttaaacgggccatatttgcagggacgagtgcaatatttaagcct 10953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 2e-59; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 12414056 - 12414213
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  12414056 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttatttt 12414155  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12414156 acaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 12414213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 12426116 - 12426273
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  12426116 cacgtaggcattttggtgacttgtcatgacttaaatgggtccaggggtatttttaaaagacagatttttttgcggggactgatttctgaatttttatttt 12426215  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12426216 acaaggatgaaaacttaaacggaccatatttgcagggacgagtgcaatatttaagcct 12426273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 4731902 - 4732059
Alignment:
Q  8 cacgtaggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttatttt 107  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |       |||||||||||||||||||||||||||||    
T  4731902 cacgtagacattttggtgacttgtcatgacttaaatgggcccagggatatttttaaaagacatatttttttgcggggactgatttctgaatttttatttt 4732001  T
Q  108 acaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  4732002 acaaggaccaaaacttaaacggaccatatttgcagggatgagtgcaatatttaagcct 4732059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 79 - 170
Target Start/End: Complemental strand, 4731800 - 4731709
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaat 170  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4731800 gcgggaactgatttctgaatttttattttacaaggaccaaatcttaaacgggccatatttgcagggacgagtgcaatatttaagccaaaaat 4731709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 12413904 - 12413835
Alignment:
Q  98 tttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaa 167  Q
    ||||| ||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12413904 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagcctaa 12413835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 12425964 - 12425895
Alignment:
Q  98 tttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaa 167  Q
    ||||| ||||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  12425964 ttttttttttagagggacgaaaacttaaacgggccatatttgcagggacaagtgcaatatttaagcctaa 12425895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 105; Significance: 3e-52; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 7183 - 7328
Alignment:
Q  20 ttggagacttgtcatgacttaaatgggcccaggggtatttttaaaa-gacagannnnnnngcggggactgatttctgaatttttattttacaaggaccaa 118  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||       ||||||||||||||||||||||||||||||||||||||||    
T  7183 ttggtgacttgtcatgacttaaatgggcccaggggtatttttaaaaagacagatttttttgcggggactgatttctgaatttttattttacaaggaccaa 7282  T
Q  119 aacttaaacgggccatatttgcagggacgagtgcaatatttaagcc 164  Q
    |||||||||||||||||||||||||||||| | |||||||||||||    
T  7283 aacttaaacgggccatatttgcagggacgaatccaatatttaagcc 7328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 79 - 165
Target Start/End: Complemental strand, 7103 - 7017
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcct 165  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  7103 gcggggattgatttctgaatttttattttataaggaccaaaacttaaacggaccatatttgcaggaacgagtgcaatatttaagcct 7017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 88; Significance: 4e-42; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 1859 - 1739
Alignment:
Q  49 caggggtatttttaaaagacagannnnnnngcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacga 148  Q
    |||||||||||||||||||||||       ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  1859 caggggtatttttaaaagacagatttttttgcggggattgatttctgaatttttattttagaaggaccaaaacttaaacgggccatatttgcagggacga 1760  T
Q  149 gtgcaatatttaagcctaaaa 169  Q
    ||||||||||||||| |||||    
T  1759 gtgcaatatttaagcataaaa 1739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 79 - 171
Target Start/End: Original strand, 33206 - 33298
Alignment:
Q  79 gcggggactgatttctgaatttttattttacaaggaccaaaacttaaacgggccatatttgcagggacgagtgcaatatttaagcctaaaata 171  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||| |||||    
T  33206 gcggggactgatttctgaatttttattttacaaggaccaaaacataaacggaccatatttgcagggacgagtgcaatatttaaaccttaaata 33298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 125
Target Start/End: Complemental strand, 33074 - 32959
Alignment:
Q  12 taggcattttggagacttgtcatgacttaaatgggcccaggggtatttttaaaagacaga--nnnnnnngcggggactgatttctgaatttttattttac 109  Q
    |||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||         |||||||||||||||||||||||||||||||    
T  33074 taggcattttggtgacttgtcatgacttatatgggtccaggggtatttttaaaagacagatttttttttgcggggactgatttctgaatttttattttac 32975  T
Q  110 aaggaccaaaacttaa 125  Q
    ||||||||||||||||    
T  32974 aaggaccaaaacttaa 32959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 96 - 146
Target Start/End: Complemental strand, 12250 - 12200
Alignment:
Q  96 aatttttattttacaaggaccaaaacttaaacgggccatatttgcagggac 146  Q
    ||||||||||||||| |||| |||||| ||||| | |||||||||||||||    
T  12250 aatttttattttacagggactaaaactaaaacgaggcatatttgcagggac 12200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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