View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2847_low_10 (Length: 232)

Name: NF2847_low_10
Description: NF2847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2847_low_10
NF2847_low_10
[»] chr5 (11 HSPs)
chr5 (1-213)||(25477765-25477977)
chr5 (21-213)||(25469806-25469998)
chr5 (51-208)||(32557356-32557513)
chr5 (52-213)||(32651310-32651471)
chr5 (51-136)||(32710673-32710758)
chr5 (105-213)||(32858860-32858968)
chr5 (65-213)||(32768352-32768499)
chr5 (64-139)||(32748192-32748267)
chr5 (54-94)||(32763470-32763510)
chr5 (159-213)||(28475213-28475267)
chr5 (156-189)||(32660658-32660691)
[»] chr7 (2 HSPs)
chr7 (54-213)||(7969384-7969546)
chr7 (63-211)||(37577563-37577711)
[»] chr1 (1 HSPs)
chr1 (61-208)||(17583849-17583996)
[»] chr2 (1 HSPs)
chr2 (29-133)||(16757426-16757530)


Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 25477977 - 25477765
Alignment:
Q  1 tagcggaggatgataggtgcggttgtcgtctagtccccaatgatgcgcaagatgaggtggatggttgacttctcttggatgttgcaattggcaatggtct 100  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  25477977 tagcggaggatgataggtgcggttgtcgtctagtccccaatggtgcgcaagatgaggtggatggttgacttctcttggatgttgtaattggcaatggtct 25477878  T
Q  101 ggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtacttttccttgtcaaaaatcttctccttcacactgtctatcgtgtc 200  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25477877 ggcagtcgtctagttgcttaccggaaaatatcagacgttgatcgttcacttggtacttttccttgtcaaaaatcttctccttcacactgtctatcgtgtc 25477778  T
Q  201 tgaactcttaacc 213  Q
    |||||||||||||    
T  25477777 tgaactcttaacc 25477765  T

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Target: chr5; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 21 - 213
Target Start/End: Complemental strand, 25469998 - 25469806
Alignment:
Q  21 ggttgtcgtctagtccccaatgatgcgcaagatgaggtggatggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgctta 120  Q
    ||||||||||||||| || |||| ||| |||| ||||  ||||| ||||||||||| ||||||||||||||||||||||||    |||  |||||| |||    
T  25469998 ggttgtcgtctagtcgcccatgaggcgaaagacgaggaagatggctgacttctcttcgatgttgcaattggcaatggtctgatgatcaggtagttgatta 25469899  T
Q  121 ccggaaaagatcagacgttcatcgttcacttggtacttttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaacc 213  Q
    ||||||||||||||||||| |||| | | |  |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  25469898 ccggaaaagatcagacgttgatcgattattgcgtacttttccttgttaaaaatcttctccttcacactgtatatcgtgtctgaactcttaacc 25469806  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 51 - 208
Target Start/End: Original strand, 32557356 - 32557513
Alignment:
Q  51 gatgaggtggatggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcact 150  Q
    ||||||||||| ||||| |||||||||||||||| ||| ||||| ||| |||| |||||||||| |||||  || ||| ||||||||||  | || ||||    
T  32557356 gatgaggtggagggttgccttctcttggatgttgtaataggcaagggtatggctgtcatctagtagcttattggcaaacatcagacgttgttggtgcact 32557455  T
Q  151 tggtacttttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactct 208  Q
     ||  | |||||||||||| |||||| ||||||||| |  ||||||||||||||||||    
T  32557456 gggatcgtttccttgtcaagaatcttatccttcacatttgctatcgtgtctgaactct 32557513  T

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Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 52 - 213
Target Start/End: Original strand, 32651310 - 32651471
Alignment:
Q  52 atgaggtggatggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcactt 151  Q
    |||||||| ||||||||||| ||||||||| || ||| ||||| | || ||| ||| |||||||| ||||| | |||||||| |||||  |||| ||||     
T  32651310 atgaggtgaatggttgacttatcttggatgatgtaatcggcaaggatccggccgtcctctagttgtttaccagcaaagatcaaacgttggtcgtacactg 32651409  T
Q  152 ggtacttttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaacc 213  Q
    ||  |||||||| ||||| |||||||||||||||| | ||||| |||||  |||| ||||||    
T  32651410 gggtcttttcctcgtcaacaatcttctccttcacattttctatggtgtccaaactattaacc 32651471  T

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Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 32710758 - 32710673
Alignment:
Q  51 gatgaggtggatggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagac 136  Q
    |||||||| || |||||||||||||||||||||| ||||||||| |||||| |||||| |||||| ||||| || |||||||||||    
T  32710758 gatgaggttgagggttgacttctcttggatgttgtaattggcaagggtctgacagtcagctagttccttactggcaaagatcagac 32710673  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 213
Target Start/End: Complemental strand, 32858968 - 32858860
Alignment:
Q  105 gtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtactttt-ccttgtcaaaaatcttctccttcacactgtctatcgtgtctga 203  Q
    ||||||||||| |||||||||||| ||||||||||   |||  | |||||| |||| ||||||||| |||| ||||||||||| || |||||||||||||    
T  32858968 gtcatctagttccttaccggaaaatatcagacgttggccgtgta-ttggtaatttttccttgtcaagaatcatctccttcacattgactatcgtgtctga 32858870  T
Q  204 actcttaacc 213  Q
    ||||||||||    
T  32858869 actcttaacc 32858860  T

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Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 213
Target Start/End: Complemental strand, 32768499 - 32768352
Alignment:
Q  65 ttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtacttttcctt 164  Q
    |||||||||||||||||||||||||||||| ||||| |  ||||||| ||||| |||||| ||| |||| |||||  | ||  ||| ||  |  ||||||    
T  32768499 ttgacttctcttggatgttgcaattggcaagggtctcgttgtcatctcgttgcctaccggcaaatatcaaacgttgttggtgtactgggatcccttcctt 32768400  T
Q  165 gtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaacc 213  Q
    || ||||| ||||| ||||||| |  |||||||||||||| ||||||||    
T  32768399 gt-aaaaaacttcttcttcacattaactatcgtgtctgaaatcttaacc 32768352  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 32748267 - 32748192
Alignment:
Q  64 gttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgtt 139  Q
    ||||||||||||||||||||| || |||||| |||||||| ||  |||||||||||   |||||||| ||||||||    
T  32748267 gttgacttctcttggatgttgtaactggcaagggtctggcggttctctagttgcttcttggaaaagaacagacgtt 32748192  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 32763510 - 32763470
Alignment:
Q  54 gaggtggatggttgacttctcttggatgttgcaattggcaa 94  Q
    ||||||||||||||| ||||||||||||||| |||||||||    
T  32763510 gaggtggatggttgaattctcttggatgttgtaattggcaa 32763470  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 213
Target Start/End: Complemental strand, 28475267 - 28475213
Alignment:
Q  159 ttccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaacc 213  Q
    ||||||||||| |||||||| |||||||  | |||||||||||||||||| ||||    
T  28475267 ttccttgtcaagaatcttcttcttcacatcgactatcgtgtctgaactctcaacc 28475213  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 32660658 - 32660691
Alignment:
Q  156 cttttccttgtcaaaaatcttctccttcacactg 189  Q
    |||||||| |||||||||||||||||||||||||    
T  32660658 cttttcctcgtcaaaaatcttctccttcacactg 32660691  T

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Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 213
Target Start/End: Original strand, 7969384 - 7969546
Alignment:
Q  54 gaggtggatggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttgg 153  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||| || ||||||||||||||   |||  ||||||    
T  7969384 gaggtggagggttgacctctcttggatgttgcaattggcaatggtcaggctgtcatctaattgcttactggcaaagatcagacgttgcacgtgtacttgg 7969483  T
Q  154 ta--cttt-tccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaacc 213  Q
    ||  |||| | |||||| |||||||||||||||||| || |||| ||||||||||||||||||    
T  7969484 taatctttattcttgtcgaaaatcttctccttcacattgcctattgtgtctgaactcttaacc 7969546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 63 - 211
Target Start/End: Complemental strand, 37577711 - 37577563
Alignment:
Q  63 ggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgtt-catcgttcacttggtacttttc 161  Q
    |||||||||||||||||||| | ||||||||| |||| |||  | |||||||| |||||||| |||||||||||||| |||  | || | ||  |  |||    
T  37577711 ggttgacttctcttggatgtggtaattggcaagggtcaggctattatctagttccttaccggcaaagatcagacgttgcat-atgcattgggatcccttc 37577613  T
Q  162 cttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactcttaa 211  Q
     ||||||| ||||||||||||||||  | |||||||||||||||||||||    
T  37577612 attgtcaagaatcttctccttcacatcggctatcgtgtctgaactcttaa 37577563  T

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Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 61 - 208
Target Start/End: Complemental strand, 17583996 - 17583849
Alignment:
Q  61 atggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaagatcagacgttcatcgttcacttggtactttt 160  Q
    |||||||||||||||||||||||| ||| ||||| |||| ||  ||| |||||||||||||||  ||||||||||||||  | || ||||      | ||    
T  17583996 atggttgacttctcttggatgttgtaatcggcaagggtccggttgtcctctagttgcttaccgtcaaagatcagacgttgctggtgcactgcaatatctt 17583897  T
Q  161 ccttgtcaaaaatcttctccttcacactgtctatcgtgtctgaactct 208  Q
    ||||||||| |||||||| ||||||| |   |||||||||||||||||    
T  17583896 ccttgtcaagaatcttcttcttcacattcattatcgtgtctgaactct 17583849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 133
Target Start/End: Complemental strand, 16757530 - 16757426
Alignment:
Q  29 tctagtccccaatgatgcgcaagatgaggtggatggttgacttctcttggatgttgcaattggcaatggtctggcagtcatctagttgcttaccggaaaa 128  Q
    |||||||||||| |||||| |||   | || |||||||||||  | ||| |||||| ||| |||||  ||| ||| ||||||||||||||| |||| |||    
T  16757530 tctagtccccaaggatgcggaaggcaacgtcgatggttgactcattttgaatgttgtaatcggcaacagtccggctgtcatctagttgcttgccggcaaa 16757431  T
Q  129 gatca 133  Q
    |||||    
T  16757430 gatca 16757426  T

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