View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2847_low_4 (Length: 320)
Name: NF2847_low_4
Description: NF2847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2847_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 13 - 307
Target Start/End: Original strand, 18359792 - 18360086
Alignment:
| Q |
13 |
acatcctaattatgcaattttcatctaatcataatcaatttaatagaaacaa-tacttactttggatgatcaggagagatcccttggaagaagacctttg |
111 |
Q |
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| T |
18359792 |
acatcctaattatgcaattttcatctcatcataatcaattcaatagaaacaaatacttactttagatgatctggagagattccttggaagaagacctttg |
18359891 |
T |
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| Q |
112 |
ttttggtaatgtcaacattgtcatcaacccatttggcccatgttttcaatcctttctcatatgcaatcaaacgatccatatctctgaatgtattattccc |
211 |
Q |
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| T |
18359892 |
ttttggtaatgtcaacattgtcatcaatccatttggcccatgttttcaatcctttctcatatgcaaccaaacgatccatatctctgaatgtgttattccc |
18359991 |
T |
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| Q |
212 |
ttcctgaattaaatcccatctgcatatacaaagtaaaactaagaaatattgatacaaagtatacattagaaagagataattgctcttctctcatct |
307 |
Q |
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| T |
18359992 |
ttcctgaattaaatcccatctgcatatacaaagtaaaactaagaaatattgatac-aagtatacattagaaagagataattgctcttctctcatct |
18360086 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 235
Target Start/End: Complemental strand, 15112645 - 15112474
Alignment:
| Q |
64 |
atacttactttggatgatcaggagagatcccttggaagaagacctttgttttggtaatgtcaacattgtcatcaacccatttggcccatgttttcaatcc |
163 |
Q |
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| T |
15112645 |
atacttactttttatgatcaggtgaaattccttggaagaatacctttgttttgccaggatcaacattgtcatcaacccacttggcccatgtttttaaagc |
15112546 |
T |
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| Q |
164 |
tttctcatatgcaatcaaacgatccatatctctgaatgtattattcccttcctgaattaaatcccatctgca |
235 |
Q |
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| T |
15112545 |
tttcttgtacataaccaaacgattcatgtctttgtatatatgttttccttcctgaacgaaatcccatctgca |
15112474 |
T |
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